Recent advances in mass spectrometry: data independent analysis and hyper reaction monitoring
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Recent advances in mass spectrometry: data independent analysis and hyper reaction monitoring
Authors
Keywords
-
Journal
Expert Review of Proteomics
Volume 10, Issue 6, Pages 551-566
Publisher
Informa UK Limited
Online
2013-11-11
DOI
10.1586/14789450.2013.858022
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The parallel reaction monitoring method contributes to a highly sensitive polyubiquitin chain quantification
- (2013) Hikaru Tsuchiya et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Application of Label-Free Shotgun nUPLC–MSE and 2-DE Approaches in the Study of Botrytis cinerea Mycelium
- (2013) Raquel Gonzalez-Fernandez et al. JOURNAL OF PROTEOME RESEARCH
- Improving Qualitative and Quantitative Performance for MSE-based Label-free Proteomics
- (2013) Nicholas J. Bond et al. JOURNAL OF PROTEOME RESEARCH
- Effects of Traveling Wave Ion Mobility Separation on Data Independent Acquisition in Proteomics Studies
- (2013) Pavel V. Shliaha et al. JOURNAL OF PROTEOME RESEARCH
- Review of software tools for design and analysis of large scale MRM proteomic datasets
- (2013) Christopher M. Colangelo et al. METHODS
- Multiplexed MS/MS for improved data-independent acquisition
- (2013) Jarrett D Egertson et al. NATURE METHODS
- Quantitative measurements ofN-linked glycoproteins in human plasma by SWATH-MS
- (2013) Yansheng Liu et al. PROTEOMICS
- Analysing signalling networks by mass spectrometry
- (2012) Claus Jørgensen et al. AMINO ACIDS
- Label-Free Quantitation of Protein Modifications by Pseudo Selected Reaction Monitoring with Internal Reference Peptides
- (2012) Stacy D. Sherrod et al. JOURNAL OF PROTEOME RESEARCH
- Prefractionation of Intact Proteins by Reversed-Phase and Anion-Exchange Chromatography for the Differential Proteomic Analysis of Saccharomyces cerevisiae
- (2012) Jordan T. Stobaugh et al. JOURNAL OF PROTEOME RESEARCH
- Accurate Peptide Fragment Mass Analysis: Multiplexed Peptide Identification and Quantification
- (2012) Chad R. Weisbrod et al. JOURNAL OF PROTEOME RESEARCH
- Screening Method Using Selected Reaction Monitoring for Targeted Proteomics Studies of Nasal Lavage Fluid
- (2012) Harriet Mörtstedt et al. JOURNAL OF PROTEOME RESEARCH
- Selectivity of LC-MS/MS analysis: Implication for proteomics experiments
- (2012) Sebastien Gallien et al. Journal of Proteomics
- Targeted Proteomic Quantification on Quadrupole-Orbitrap Mass Spectrometer
- (2012) Sebastien Gallien et al. MOLECULAR & CELLULAR PROTEOMICS
- Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics
- (2012) Amelia C. Peterson et al. MOLECULAR & CELLULAR PROTEOMICS
- Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
- (2012) Ludovic C. Gillet et al. MOLECULAR & CELLULAR PROTEOMICS
- Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions
- (2012) Paola Picotti et al. NATURE METHODS
- The development of selected reaction monitoring methods for targeted proteomics via empirical refinement
- (2012) Michael S. Bereman et al. PROTEOMICS
- Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics
- (2012) Tujin Shi et al. PROTEOMICS
- Performance Characteristics of a New Hybrid Quadrupole Time-of-Flight Tandem Mass Spectrometer (TripleTOF 5600)
- (2011) Genna L. Andrews et al. ANALYTICAL CHEMISTRY
- More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS
- (2011) Annette Michalski et al. JOURNAL OF PROTEOME RESEARCH
- Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
- (2011) Jürgen Cox et al. JOURNAL OF PROTEOME RESEARCH
- Improved Peptide Identification by Targeted Fragmentation Using CID, HCD and ETD on an LTQ-Orbitrap Velos
- (2011) Christian K. Frese et al. JOURNAL OF PROTEOME RESEARCH
- A targeted proteomics–based pipeline for verification of biomarkers in plasma
- (2011) Jeffrey R Whiteaker et al. NATURE BIOTECHNOLOGY
- Quantification of proteins using data-independent analysis (MSE) in simple andcomplex samples: A systematic evaluation
- (2011) Yishai Levin et al. PROTEOMICS
- Peptide Labeling with Isobaric Tags Yields Higher Identification Rates Using iTRAQ 4-Plex Compared to TMT 6-Plex and iTRAQ 8-Plex on LTQ Orbitrap
- (2010) Peter Pichler et al. ANALYTICAL CHEMISTRY
- XDIA: improving on the label-free data-independent analysis
- (2010) Paulo C. Carvalho et al. BIOINFORMATICS
- Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
- (2010) Brendan MacLean et al. BIOINFORMATICS
- Improving Protein and Proteome Coverage through Data-Independent Multiplexed Peptide Fragmentation
- (2010) Kevin Blackburn et al. JOURNAL OF PROTEOME RESEARCH
- Quantifying the Impact of Chimera MS/MS Spectra on Peptide Identification in Large-Scale Proteomics Studies
- (2010) Stephane Houel et al. JOURNAL OF PROTEOME RESEARCH
- Proteomics on an Orbitrap Benchtop Mass Spectrometer Using All-ion Fragmentation
- (2010) Tamar Geiger et al. MOLECULAR & CELLULAR PROTEOMICS
- Peptide Identification from Mixture Tandem Mass Spectra
- (2010) Jian Wang et al. MOLECULAR & CELLULAR PROTEOMICS
- Increased Selectivity, Analytical Precision, and Throughput in Targeted Proteomics
- (2010) Reiko Kiyonami et al. MOLECULAR & CELLULAR PROTEOMICS
- A proteomic approach for plasma biomarker discovery with 8-plex iTRAQ labeling and SCX-LC-MS/MS
- (2010) Haige Ye et al. MOLECULAR AND CELLULAR BIOCHEMISTRY
- Analysis of the human pituitary proteome by data independent label-free liquid chromatography tandem mass spectrometry
- (2010) Divya Krishnamurthy et al. PROTEOMICS
- Data-independent liquid chromatography/mass spectrometry (LC/MSE) detection and quantification of the secretedApium graveolenspathogen defense protein mannitol dehydrogenase
- (2010) Kevin Blackburn et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- Stable-isotope dilution LC–MS for quantitative biomarker analysis
- (2010) Eugene Ciccimaro et al. Bioanalysis
- Multiple Reaction Monitoring Cubed for Protein Quantification at the Low Nanogram/Milliliter Level in Nondepleted Human Serum
- (2009) T. Fortin et al. ANALYTICAL CHEMISTRY
- Deconvolution of Mixture Spectra from Ion-Trap Data-Independent-Acquisition Tandem Mass Spectrometry
- (2009) Marshall Bern et al. ANALYTICAL CHEMISTRY
- Antipsychotic Treatment Alters Protein Expression Associated with Presynaptic Function and Nervous System Development in Rat Frontal Cortex
- (2009) Dan Ma et al. JOURNAL OF PROTEOME RESEARCH
- A Comparison of Labeling and Label-Free Mass Spectrometry-Based Proteomics Approaches
- (2009) Vibhuti J. Patel et al. JOURNAL OF PROTEOME RESEARCH
- Multiple Products Monitoring as a Robust Approach for Peptide Quantification
- (2009) Je-Hyun Baek et al. JOURNAL OF PROTEOME RESEARCH
- Expression Profiling of Fibroblasts Identifies Cell Cycle Abnormalities in Schizophrenia
- (2009) L. Wang et al. JOURNAL OF PROTEOME RESEARCH
- Global proteomic profiling reveals altered proteomic signature in schizophrenia serum
- (2009) Y Levin et al. MOLECULAR PSYCHIATRY
- High-throughput generation of selected reaction-monitoring assays for proteins and proteomes
- (2009) Paola Picotti et al. NATURE METHODS
- Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures
- (2009) Guo-Zhong Li et al. PROTEOMICS
- The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS
- (2009) Scott J. Geromanos et al. PROTEOMICS
- Detection of co-eluted peptides using database search methods
- (2008) Gelio Alves et al. Biology Direct
- OpenMS – An open-source software framework for mass spectrometry
- (2008) Marc Sturm et al. BMC BIOINFORMATICS
- Precursor-Ion Mass Re-Estimation Improves Peptide Identification on Hybrid Instruments
- (2008) Roland Luethy et al. JOURNAL OF PROTEOME RESEARCH
- Absolute Protein Quantification by LC/MSEfor Global Analysis of Salicylic Acid-Induced Plant Protein Secretion Responses
- (2008) Fang-yi Cheng et al. JOURNAL OF PROTEOME RESEARCH
- An Integrated, Directed Mass Spectrometric Approach for In-depth Characterization of Complex Peptide Mixtures
- (2008) Alexander Schmidt et al. MOLECULAR & CELLULAR PROTEOMICS
- Targeted proteomic strategy for clinical biomarker discovery
- (2008) Ralph Schiess et al. Molecular Oncology
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started