Algorithms for thede novosequencing of peptides from tandem mass spectra

Peptide de Novo Sequencing Using 157 nm Photodissociation in a Tandem Time-of-Flight Mass Spectrometer

(2010) Liangyi Zhang et al.   ANALYTICAL CHEMISTRY

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry

(2010) Chongle Pan et al.   BMC BIOINFORMATICS

pNovo:De novoPeptide Sequencing and Identification Using HCD Spectra

(2010) Hao Chi et al.   JOURNAL OF PROTEOME RESEARCH

Peptidomics Coming of Age: A Review of Contributions from a Bioinformatics Angle

(2010) Gerben Menschaert et al.   JOURNAL OF PROTEOME RESEARCH

Charge remote fragmentation in electron capture and electron transfer dissociation

(2010) Xiaojuan Li et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

OVNIp: An open source application facilitating the interpretation, the validation and the edition of proteomics data generated by MS analyses and de novo sequencing

(2010) Dominique Tessier et al.   PROTEOMICS

Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets

(2010) Kang Ning et al.   PROTEOMICS

Data maximization by multipass analysis of protein mass spectra

(2010) Ravi Tharakan et al.   PROTEOMICS

Efficient and clean charge derivatization of peptides for analysis by mass spectrometry

(2010) Mingrui An et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Deconvolution of Mixture Spectra from Ion-Trap Data-Independent-Acquisition Tandem Mass Spectrometry

(2009) Marshall Bern et al.   ANALYTICAL CHEMISTRY

Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing

(2009) Ritendra Datta et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A Hybrid,de NovoBased, Genome-Wide Database Search Approach Applied to the Sea Urchin Neuropeptidome

(2009) Gerben Menschaert et al.   JOURNAL OF PROTEOME RESEARCH

Spectral Profiles, a Novel Representation of Tandem Mass Spectra and Their Applications forde NovoPeptide Sequencing and Identification

(2009) Sangtae Kim et al.   MOLECULAR & CELLULAR PROTEOMICS

Isolation, purification and de novo sequencing of TBD-1, the first beta-defensin from leukocytes of reptiles

(2009) Christin Stegemann et al.   PROTEOMICS

De novosequencing of peptides by MS/MS

(2009) Joerg Seidler et al.   PROTEOMICS

Combining Bottom-Up and Top-Down Mass Spectrometric Strategies for De Novo Sequencing of the Crustacean Hyperglycemic Hormone from Cancer borealis

(2008) Mingming Ma et al.   ANALYTICAL CHEMISTRY

Multi-spectra peptide sequencing and its applications to multistage mass spectrometry

(2008) N. Bandeira et al.   BIOINFORMATICS

2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments

(2008) Jens Allmer et al.   BMC BIOINFORMATICS

DirecTag: Accurate Sequence Tags from Peptide MS/MS through Statistical Scoring

(2008) David L. Tabb et al.   JOURNAL OF PROTEOME RESEARCH

Protein identification pipeline for the homology-driven proteomics

(2008) Magno Junqueira et al.   Journal of Proteomics

Electron Capture/Transfer versus Collisionally Activated/Induced Dissociations: Solo or Duet?

(2008) Roman A. Zubarev et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Spectral Dictionaries

(2008) Sangtae Kim et al.   MOLECULAR & CELLULAR PROTEOMICS

Automated de novo protein sequencing of monoclonal antibodies

(2008) Nuno Bandeira et al.   NATURE BIOTECHNOLOGY

A comparative study of the accuracy of severalde novosequencing software packages for datasets derived by matrix-assisted laser desorption/ionisation and electrospray

(2008) Scott Bringans et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY