Recent advances in protein–protein interaction prediction: experimental and computational methods

Large-Scale Protein-Protein Interaction Detection Approaches: Past, Present and Future

(2014) N. Chepelev et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

Predicting Functions of Proteins in Mouse Based on Weighted Protein-Protein Interaction Network and Protein Hybrid Properties

(2011) Lele Hu et al.   PLoS One

Predicting protein–protein interactions from protein sequences using meta predictor

(2010) Jun-Feng Xia et al.   AMINO ACIDS

Simple sequence-based kernels do not predict protein-protein interactions

(2010) J. Yu et al.   BIOINFORMATICS

Active learning for human protein-protein interaction prediction

(2010) Thahir P Mohamed et al.   BMC BIOINFORMATICS

Predicting protein-protein interactions in unbalanced data using the primary structure of proteins

(2010) Chi-Yuan Yu et al.   BMC BIOINFORMATICS

Predicting the protein-protein interactions using primary structures with predicted protein surface

(2010) Darby Chang et al.   BMC BIOINFORMATICS

Cell structure and dynamics

(2010) Arshad Desai et al.   CURRENT OPINION IN CELL BIOLOGY

Quantitative Y2H screening: Cloning and signal peptide engineering of a fungal secretory LacA gene and its application to yeast two-hybrid system as a quantitative reporter

(2010) Takuma Kamiya et al.   JOURNAL OF BIOTECHNOLOGY

Large-Scale Prediction of Human Protein−Protein Interactions from Amino Acid Sequence Based on Latent Topic Features

(2010) Xiao-Yong Pan et al.   JOURNAL OF PROTEOME RESEARCH

Sequence-based protein-protein interaction prediction via support vector machine

(2010) Yongcui Wang et al.   Journal of Systems Science & Complexity

Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition

(2010) Hao Lin et al.   JOURNAL OF THEORETICAL BIOLOGY

Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition

(2010) Maqsood Hayat et al.   JOURNAL OF THEORETICAL BIOLOGY

AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties

(2010) Krishna Kumar Kandaswamy et al.   JOURNAL OF THEORETICAL BIOLOGY

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

GPCR-2L: predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions

(2010) Xuan Xiao et al.   Molecular BioSystems

Reverse phase protein microarrays advance to use in clinical trials

(2010) Claudius Mueller et al.   Molecular Oncology

Protein Microarrays: Novel Developments and Applications

(2010) Luis Berrade et al.   PHARMACEUTICAL RESEARCH

Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization

(2010) Kuo-Chen Chou et al.   PLoS One

Prediction of Cyclin Proteins Using Chous Pseudo Amino Acid Composition

(2010) Hassan Mohabatkar   PROTEIN AND PEPTIDE LETTERS

Docking by structural similarity at protein-protein interfaces

(2010) Rohita Sinha et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A large set of estrogen receptor β-interacting proteins identified by tandem affinity purification in hormone-responsive human breast cancer cell nuclei

(2010) Giovanni Nassa et al.   PROTEOMICS

Protein microarrays for genome-wide posttranslational modification analysis

(2010) Yifat Merbl et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Accuracy of Protein-Protein Binding Sites in High-Throughput Template-Based Modeling

(2010) Petras J. Kundrotas et al.   PLoS Computational Biology

Predicting protein–protein interactions from sequence using correlation coefficient and high-quality interaction dataset

(2009) Ming-Guang Shi et al.   AMINO ACIDS

A surface display yeast two-hybrid screening system for high-throughput protein interactome mapping

(2009) Jun Chen et al.   ANALYTICAL BIOCHEMISTRY

Applications of Protein Biochips in Biomedical and Biotechnological Research

(2009) Dirk Weinrich et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Critical assessment of sequence-based protein-protein interaction prediction methods that do not require homologous protein sequences

(2009) Yungki Park   BMC BIOINFORMATICS

Protein-protein interaction based on pairwise similarity

(2009) Nazar Zaki et al.   BMC BIOINFORMATICS

Dissecting protein function and signaling using protein microarrays

(2009) Alejandro Wolf-Yadlin et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach

(2009) Yu-hong Zeng et al.   JOURNAL OF THEORETICAL BIOLOGY

Targeted Therapies: The Rare Cancer Paradigm

(2009) Marco A. Pierotti et al.   Molecular Oncology

Exploiting Amino Acid Composition for Predicting Protein-Protein Interactions

(2009) Sushmita Roy et al.   PLoS One

Prediction of Cell Wall Lytic Enzymes Using Chous Amphiphilic Pseudo Amino Acid Composition

(2009) Hui Ding et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of Protein Secondary Structure Content by Using the Concept of Chous Pseudo Amino Acid Composition and Support Vector Machine

(2009) Chao Chen et al.   PROTEIN AND PEPTIDE LETTERS

Critical assessment of methods of protein structure prediction-Round VIII

(2009) John Moult et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A novel S3S-TAP-tag for the isolation of T-cell interaction partners of adhesion and degranulation promoting adaptor protein

(2009) Roland Lehmann et al.   PROTEOMICS

Mammalian two-hybrids come of age

(2009) Sam Lievens et al.   TRENDS IN BIOCHEMICAL SCIENCES

Two-hybrid technologies in proteomics research

(2008) Bernhard Suter et al.   CURRENT OPINION IN BIOTECHNOLOGY

A yEGFP-based reporter system for high-throughput yeast two-hybrid assay by flow cytometry

(2008) Jun Chen et al.   CYTOMETRY PART A

MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays

(2008) S. C. Popescu et al.   GENES & DEVELOPMENT

The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition

(2008) Hao Lin   JOURNAL OF THEORETICAL BIOLOGY

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

(2008) Kuo-Chen Chou et al.   Nature Protocols

Global investigation of protein–protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences

(2008) S. Pitre et al.   NUCLEIC ACIDS RESEARCH

Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences

(2008) Yanzhi Guo et al.   NUCLEIC ACIDS RESEARCH

The Host-Dependent Interaction of α-Importins with Influenza PB2 Polymerase Subunit Is Required for Virus RNA Replication

(2008) Patricia Resa-Infante et al.   PLoS One

Engineering a Novel Multifunctional Green Fluorescent Protein Tag for a Wide Variety of Protein Research

(2008) Takuya Kobayashi et al.   PLoS One

Predicting Subcellular Localization of Mycobacterial Proteins by Using Chous Pseudo Amino Acid Composition

(2008) Hao Lin et al.   PROTEIN AND PEPTIDE LETTERS

Using the Concept of Chous Pseudo Amino Acid Composition to Predict Apoptosis Proteins Subcellular Location: An Approach by Approximate Entropy

(2008) Xiaoying Jian et al.   PROTEIN AND PEPTIDE LETTERS

Predicting Protein Subcellular Location Using Chous Pseudo Amino Acid Composition and Improved Hybrid Approach

(2008) Feng-Min Li et al.   PROTEIN AND PEPTIDE LETTERS

Proteomic analysis of breast cancer tissue reveals upregulation of actin-remodeling proteins and its relevance to cancer invasiveness

(2008) Dong-Hyun Kim et al.   Proteomics Clinical Applications

Sequence-based prediction of protein-protein interactions by means of codon usage

(2008) Hamed Najafabadi et al.   GENOME BIOLOGY

ASaccharomyces cerevisiae cell-based quantitative β-galactosidase assay compatible with robotic handling and high-throughput screening

(2007) Rogerio Alves de Almeida et al.   YEAST