Quantifying Reversible Oxidation of Protein Thiols in Photosynthetic Organisms

Systematic Assessment of Survey Scan and MS2-Based Abundance Strategies for Label-Free Quantitative Proteomics Using High-Resolution MS Data

(2014) Chengjian Tu et al.   JOURNAL OF PROTEOME RESEARCH

First Proteomic Study of S-Glutathionylation in Cyanobacteria

(2014) Solenne Chardonnet et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic Quantification and Site-Mapping of S-Nitrosylated Proteins Using Isobaric iodoTMT Reagents

(2014) Zhe Qu et al.   JOURNAL OF PROTEOME RESEARCH

Proteome-wide Light/Dark Modulation of Thiol Oxidation in Cyanobacteria Revealed by Quantitative Site-specific Redox Proteomics

(2014) Jia Guo et al.   MOLECULAR & CELLULAR PROTEOMICS

Monitoring in vivo reversible cysteine oxidation in proteins using ICAT and mass spectrometry

(2014) Sarela García-Santamarina et al.   Nature Protocols

Parasitic Worms Stimulate Host NADPH Oxidases to Produce Reactive Oxygen Species That Limit Plant Cell Death and Promote Infection

(2014) S. Siddique et al.   Science Signaling

Large-Scale Capture of Peptides Containing Reversibly Oxidized Cysteines by Thiol-Disulfide Exchange Applied to the Myocardial Redox Proteome

(2013) Jana Paulech et al.   ANALYTICAL CHEMISTRY

Sources of Technical Variability in Quantitative LC–MS Proteomics: Human Brain Tissue Sample Analysis

(2013) Paul D. Piehowski et al.   JOURNAL OF PROTEOME RESEARCH

Resin-assisted enrichment of thiols as a general strategy for proteomic profiling of cysteine-based reversible modifications

(2013) Jia Guo et al.   Nature Protocols

Identification of redox-sensitive cysteines in the Arabidopsis proteome using OxiTRAQ, a quantitative redox proteomics method

(2013) Pei Liu et al.   PROTEOMICS

Characterization of reaction conditions providing rapid and specific cysteine alkylation for peptide-based mass spectrometry

(2012) Jana Paulech et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Performance Characteristics of a New Hybrid Quadrupole Time-of-Flight Tandem Mass Spectrometer (TripleTOF 5600)

(2011) Genna L. Andrews et al.   ANALYTICAL CHEMISTRY

Quantitative Label-Free Phosphoproteomics Strategy for Multifaceted Experimental Designs

(2011) Erik J. Soderblom et al.   ANALYTICAL CHEMISTRY

Proteomic Analysis of Early-Responsive Redox-Sensitive Proteins in Arabidopsis

(2011) Hai Wang et al.   JOURNAL OF PROTEOME RESEARCH

Comprehensive Comparison of iTRAQ and Label-free LC-Based Quantitative Proteomics Approaches Using Two Chlamydomonas reinhardtii Strains of Interest for Biofuels Engineering

(2011) Hongxia Wang et al.   JOURNAL OF PROTEOME RESEARCH

Systematic Comparison of Label-Free, Metabolic Labeling, and Isobaric Chemical Labeling for Quantitative Proteomics on LTQ Orbitrap Velos

(2011) Zhou Li et al.   JOURNAL OF PROTEOME RESEARCH

CysTRAQ — A combination of iTRAQ and enrichment of cysteinyl peptides for uncovering and quantifying hidden proteomes

(2011) Vojtech Tambor et al.   Journal of Proteomics

Identification and Quantification of S-Nitrosylation by Cysteine Reactive Tandem Mass Tag Switch Assay

(2011) Christopher I. Murray et al.   MOLECULAR & CELLULAR PROTEOMICS

Nitric oxide influences auxin signaling through S-nitrosylation of the Arabidopsis TRANSPORT INHIBITOR RESPONSE 1 auxin receptor

(2011) María C. Terrile et al.   PLANT JOURNAL

Redox-regulatory mechanisms induced by oxidative stress in Brassica juncea roots monitored by 2-DE proteomics

(2011) Sophie Alvarez et al.   PROTEOMICS

Minimising iTRAQ ratio compression through understanding LC-MS elution dependence and high-resolution HILIC fractionation

(2011) Saw Yen Ow et al.   PROTEOMICS

The role of statistical power analysis in quantitative proteomics

(2011) Yishai Levin   PROTEOMICS

Less label, more free: Approaches in label-free quantitative mass spectrometry

(2011) Karlie A. Neilson et al.   PROTEOMICS

Quantitative Analysis of the Intra- and Inter-Individual Variability of the Normal Urinary Proteome

(2010) Nagarjuna Nagaraj et al.   JOURNAL OF PROTEOME RESEARCH

Targeted Quantitation of Site-Specific Cysteine Oxidation in Endogenous Proteins Using a Differential Alkylation and Multiple Reaction Monitoring Mass Spectrometry Approach

(2010) Jason M. Held et al.   MOLECULAR & CELLULAR PROTEOMICS

Addressing Accuracy and Precision Issues in iTRAQ Quantitation

(2010) Natasha A. Karp et al.   MOLECULAR & CELLULAR PROTEOMICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

A Comparison of Labeling and Label-Free Mass Spectrometry-Based Proteomics Approaches

(2009) Vibhuti J. Patel et al.   JOURNAL OF PROTEOME RESEARCH

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

(2009) Vincent A Fusaro et al.   NATURE BIOTECHNOLOGY

Quantifying the global cellular thiol-disulfide status

(2009) R. E. Hansen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive analysis of the Brassica juncea root proteome in response to cadmium exposure by complementary proteomic approaches

(2009) Sophie Alvarez et al.   PROTEOMICS

Selective fluorescent labeling of S-nitrosothiols (S-FLOS): A novel method for studying S-nitrosation

(2008) Lakshmi Santhanam et al.   NITRIC OXIDE-BIOLOGY AND CHEMISTRY