Combining billing codes, clinical notes, and medications from electronic health records provides superior phenotyping performance

Extracting research-quality phenotypes from electronic health records to support precision medicine

(2015) Wei-Qi Wei et al.   Genome Medicine

Development and Validation of an Algorithm to Identify Patients Newly Diagnosed with HIV Infection from Electronic Health Records

(2014) Matthew Bidwell Goetz et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Performance and Limitations of Administrative Data in the Identification of AKI

(2014) M. E. Grams et al.   Clinical Journal of the American Society of Nephrology

Assessing the validity of using administrative data to identify patients with epilepsy

(2014) Karen Tu et al.   EPILEPSIA

Characterization of Statin Dose Response in Electronic Medical Records

(2013) W-Q Wei et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Using electronic health records data to identify patients with chronic pain in a primary care setting

(2013) Terrence Y Tian et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network

(2013) K. M. Newton et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

A review of approaches to identifying patient phenotype cohorts using electronic health records

(2013) Chaitanya Shivade et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data

(2013) Joshua C Denny et al.   NATURE BIOTECHNOLOGY

Electronic Medical Records as a Tool in Clinical Pharmacology: Opportunities and Challenges

(2012) D M Roden et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Deep phenotyping for precision medicine

(2012) Peter N. Robinson   HUMAN MUTATION

The absence of longitudinal data limits the accuracy of high-throughput clinical phenotyping for identifying type 2 diabetes mellitus subjects

(2012) Wei-Qi Wei et al.   INTERNATIONAL JOURNAL OF MEDICAL INFORMATICS

Portability of an algorithm to identify rheumatoid arthritis in electronic health records

(2012) Robert J Carroll et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Impact of data fragmentation across healthcare centers on the accuracy of a high-throughput clinical phenotyping algorithm for specifying subjects with type 2 diabetes mellitus

(2012) Wei-Qi Wei et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Next-generation phenotyping of electronic health records

(2012) G. Hripcsak et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Validation of three coding algorithms to identify patients with end-stage liver disease in an administrative database

(2012) D Goldberg et al.   PHARMACOEPIDEMIOLOGY AND DRUG SAFETY

Validation of a coding algorithm to identify patients with hepatocellular carcinoma in an administrative database

(2012) David S. Goldberg et al.   PHARMACOEPIDEMIOLOGY AND DRUG SAFETY

The validity of using ICD-9 codes and pharmacy records to identify patients with chronic obstructive pulmonary disease

(2011) Colin R Cooke et al.   BMC HEALTH SERVICES RESEARCH

Validation of physician billing and hospitalization data to identify patients with ischemic heart disease using data from the Electronic Medical Record Administrative data Linked Database (EMRALD

(2011) Karen Tu et al.   CANADIAN JOURNAL OF CARDIOLOGY

The Emerging Role of Electronic Medical Records in Pharmacogenomics

(2011) R A Wilke et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Document-level classification of CT pulmonary angiography reports based on an extension of the ConText algorithm

(2011) Brian E. Chapman et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Data from clinical notes: a perspective on the tension between structure and flexible documentation

(2011) S. T. Rosenbloom et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study

(2011) Abel N Kho et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Electronic Medical Records for Genetic Research: Results of the eMERGE Consortium

(2011) A. N. Kho et al.   Science Translational Medicine

Patients Treated at Multiple Acute Health Care Facilities

(2010) Fabienne C. Bourgeois   ARCHIVES OF INTERNAL MEDICINE

Assessing the accuracy of observer-reported ancestry in a biorepository linked to electronic medical records

(2010) Logan Dumitrescu et al.   GENETICS IN MEDICINE

MedEx: a medication information extraction system for clinical narratives

(2010) H. Xu et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Accelerating the Use of Electronic Health Records in Physician Practices

(2010) Steven Shea et al.   NEW ENGLAND JOURNAL OF MEDICINE

‘Deep phenotyping’: characterizing populations in the era of genomics and systems biology

(2009) Russell P Tracy   CURRENT OPINION IN LIPIDOLOGY

Evaluation of a Method to Identify and Categorize Section Headers in Clinical Documents

(2009) J. C. Denny et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Development of a Large-Scale De-Identified DNA Biobank to Enable Personalized Medicine

(2008) DM Roden et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Word Sense Disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering

(2008) Bill Andreopoulos et al.   International Journal of Data Mining and Bioinformatics