MULTIDIMENSIONAL ADAPTIVE EVOLUTION OF A FEED-FORWARD NETWORK AND THE ILLUSION OF COMPENSATION

Promoter Elements Regulate Cytoplasmic mRNA Decay

(2011) Almog Bregman et al.   CELL

Single-Molecule mRNA Decay Measurements Reveal Promoter- Regulated mRNA Stability in Yeast

(2011) Tatjana Trcek et al.   CELL

THE CAUSES OF EPISTASIS IN GENETIC NETWORKS

(2011) Javier Macía et al.   EVOLUTION

Molecular spandrels: tests of adaptation at the genetic level

(2011) Rowan D. H. Barrett et al.   NATURE REVIEWS GENETICS

Distinct Functional Constraints Partition Sequence Conservation in a cis-Regulatory Element

(2011) Antoine Barrière et al.   PLoS Genetics

Transcriptome Kinetics Is Governed by a Genome-Wide Coupling of mRNA Production and Degradation: A Role for RNA Pol II

(2011) Ophir Shalem et al.   PLoS Genetics

Correlated Evolution of Nearby Residues in Drosophilid Proteins

(2011) Benjamin Callahan et al.   PLoS Genetics

Initial Mutations Direct Alternative Pathways of Protein Evolution

(2011) Merijn L. M. Salverda et al.   PLoS Genetics

Does Positive Selection Drive Transcription Factor Binding Site Turnover? A Test with Drosophila Cis-Regulatory Modules

(2011) Bin Z. He et al.   PLoS Genetics

Changes in Selective Effects Over Time Facilitate Turnover of Enhancer Sequences

(2010) K. Bullaughey   GENETICS

Diminishing Returns From Beneficial Mutations and Pervasive Epistasis Shape the Fitness Landscape for Rifampicin Resistance in Pseudomonas aeruginosa

(2010) R. C. MacLean et al.   GENETICS

Coevolution within a transcriptional network by compensatory trans and cis mutations

(2010) D. Kuo et al.   GENOME RESEARCH

New Genes in Drosophila Quickly Become Essential

(2010) S. Chen et al.   SCIENCE

Evolutionary Mirages: Selection on Binding Site Composition Creates the Illusion of Conserved Grammars in Drosophila Enhancers

(2010) Richard W. Lusk et al.   PLoS Genetics

Pervasive Cryptic Epistasis in Molecular Evolution

(2010) Mark Lunzer et al.   PLoS Genetics

Abundant Genetic Variation + Strong Selection = Multivariate Genetic Constraints: A Geometric View of Adaptation

(2009) Bruce Walsh et al.   Annual Review of Ecology Evolution and Systematics

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization

(2009) Yair Field et al.   NATURE GENETICS

Genetic Interactions Between Transcription Factors Cause Natural Variation in Yeast

(2009) J. Gerke et al.   SCIENCE

Stochasticity in evolution

(2009) Thomas Lenormand et al.   TRENDS IN ECOLOGY & EVOLUTION

LONG-TERM ADAPTATION OF EPISTATIC GENETIC NETWORKS

(2008) Roman Yukilevich et al.   EVOLUTION

Waiting for Two Mutations: With Applications to Regulatory Sequence Evolution and the Limits of Darwinian Evolution

(2008) Rick Durrett et al.   GENETICS

Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster

(2008) A. K. Holloway et al.   GENOME RESEARCH

Epistasis — the essential role of gene interactions in the structure and evolution of genetic systems

(2008) Patrick C. Phillips   NATURE REVIEWS GENETICS

The Evolution of Combinatorial Gene Regulation in Fungi

(2008) Brian B Tuch et al.   PLOS BIOLOGY