GPU-computing in econophysics and statistical physics

Accelerating SSL with GPUs

(2012) Keon Jang et al.   ACM SIGCOMM Computer Communication Review

Econophysics — complex correlations and trend switchings in financial time series

(2011) T. Preis   European Physical Journal-Special Topics

GPU computing for systems biology

(2010) L. Dematte et al.   BRIEFINGS IN BIOINFORMATICS

CUDA simulations of active dumbbell suspensions

(2010) Victor B. Putz et al.   CHEMICAL PHYSICS

Parallelized computation for computer simulation of electrocardiograms using personal computers with multi-core CPU and general-purpose GPU

(2010) Wenfeng Shen et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Parallel hyperbolic PDE simulation on clusters: Cell versus GPU

(2010) Scott Rostrup et al.   COMPUTER PHYSICS COMMUNICATIONS

Multi-GPU accelerated multi-spin Monte Carlo simulations of the 2D Ising model

(2010) Benjamin Block et al.   COMPUTER PHYSICS COMMUNICATIONS

Real-time optical micro-manipulation using optimized holograms generated on the GPU

(2010) S. Bianchi et al.   COMPUTER PHYSICS COMMUNICATIONS

Fast calculation of HELAS amplitudes using graphics processing unit (GPU)

(2010) K. Hagiwara et al.   EUROPEAN PHYSICAL JOURNAL C

The GPU Computing Era

(2010) John Nickolls et al.   IEEE MICRO

GPU Accelerated Adams–Bashforth Multirate Discontinuous Galerkin FEM Simulation of High-Frequency Electromagnetic Fields

(2010) Nico Godel et al.   IEEE TRANSACTIONS ON MAGNETICS

Scalability of Higher-Order Discontinuous Galerkin FEM Computations for Solving Electromagnetic Wave Propagation Problems on GPU Clusters

(2010) Nico Godel et al.   IEEE TRANSACTIONS ON MAGNETICS

Hybrid Core Acceleration of UWB SIRE Radar Signal Processing

(2010) Song Jun Park et al.   IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS

Cyclic Reduction Tridiagonal Solvers on GPUs Applied to Mixed-Precision Multigrid

(2010) Dominik Goddeke et al.   IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS

High-order finite-element seismic wave propagation modeling with MPI on a large GPU cluster

(2010) Dimitri Komatitsch et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Switching Phenomena in a System with No Switches

(2010) Tobias Preis et al.   JOURNAL OF STATISTICAL PHYSICS

Low cost, high performance GPU computing solution for atomic resolution cryoEM single-particle reconstruction

(2010) Xiaokang Zhang et al.   JOURNAL OF STRUCTURAL BIOLOGY

A convolution-superposition dose calculation engine for GPUs

(2010) Sami Hissoiny et al.   MEDICAL PHYSICS

Multilevel fast multipole algorithm enhanced by GPU parallel technique for electromagnetic scattering problems

(2010) Kan Xu et al.   MICROWAVE AND OPTICAL TECHNOLOGY LETTERS

Complex dynamics of our economic life on different scales: insights from search engine query data

(2010) T. Preis et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Correlated randomness and switching phenomena

(2010) H.E. Stanley et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

The gputools package enables GPU computing in R

(2009) J. Buckner et al.   BIOINFORMATICS

Simulation of P systems with active membranes on CUDA

(2009) J. M. Cecilia et al.   BRIEFINGS IN BIOINFORMATICS

Probing biomolecular machines with graphics processors

(2009) James C. Phillips et al.   COMMUNICATIONS OF THE ACM

GPU-based cone beam computed tomography

(2009) Peter B. Noël et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

SCELib3.0: The new revision of SCELib, the parallel computational library of molecular properties in the Single Center Approach

(2009) N. Sanna et al.   COMPUTER PHYSICS COMMUNICATIONS

Quantum computer simulation using the CUDA programming model

(2009) Eladio Gutiérrez et al.   COMPUTER PHYSICS COMMUNICATIONS

Air pollution modelling using a Graphics Processing Unit with CUDA

(2009) F. Molnár et al.   COMPUTER PHYSICS COMMUNICATIONS

Exploiting graphical processing units for data-parallel scientific applications

(2009) A. Leist et al.   CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE

On the probability distribution of stock returns in the Mike-Farmer model

(2009) G.-F. Gu et al.   EUROPEAN PHYSICAL JOURNAL B

Hybrid of genetic algorithm and local search to solve MAX-SAT problem using nVidia CUDA framework

(2009) Asim Munawar et al.   Genetic Programming and Evolvable Machines

Isosurface Extraction and View-Dependent Filtering from Time-Varying Fields Using Persistent Time-Octree (PTOT)

(2009) Cong Wang et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Kd-Jump: a Path-Preserving Stackless Traversal for Faster Isosurface Raytracing on GPUs

(2009) D.M. Hughes et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

CUSA and CUDE: GPU-Accelerated Methods for Estimating Solvent Accessible Surface Area and Desolvation

(2009) David Dynerman et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

PAPER—Accelerating parallel evaluations of ROCS

(2009) Imran S. Haque et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

GPU accelerated Monte Carlo simulation of the 2D and 3D Ising model

(2009) Tobias Preis et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Technical Note: RabbitCT-an open platform for benchmarking 3D cone-beam reconstruction algorithmsa)

(2009) C. Rohkohl et al.   MEDICAL PHYSICS

Accelerating Monte Carlo simulations of photon transport in a voxelized geometry using a massively parallel graphics processing unit

(2009) Andreu Badal et al.   MEDICAL PHYSICS

Accelerated ray tracing for radiotherapy dose calculations on a GPU

(2009) M. de Greef et al.   MEDICAL PHYSICS

A configurable simulation environment for the efficient simulation of large-scale spiking neural networks on graphics processors

(2009) Jayram Moorkanikara Nageswaran et al.   NEURAL NETWORKS

Teraflop per second gravitational lensing ray-shooting using graphics processing units

(2009) Alexander C. Thompson et al.   NEW ASTRONOMY

Accelerated fluctuation analysis by graphic cards and complex pattern formation in financial markets

(2009) Tobias Preis et al.   NEW JOURNAL OF PHYSICS

CUDA–MEME: Accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units

(2009) Yongchao Liu et al.   PATTERN RECOGNITION LETTERS

GPU-based ultrafast IMRT plan optimization

(2009) Chunhua Men et al.   PHYSICS IN MEDICINE AND BIOLOGY

A GPU-based Real-time Software Correlation System for the Murchison Widefield Array Prototype

(2009) Randall B. Wayth et al.   PUBLICATIONS OF THE ASTRONOMICAL SOCIETY OF THE PACIFIC

Accelerating molecular dynamics simulations using Graphics Processing Units with CUDA

(2008) Weiguo Liu et al.   COMPUTER PHYSICS COMMUNICATIONS

Fluctuation patterns in high-frequency financial asset returns

(2008) T. Preis et al.   EPL

Parallel Computing Experiences with CUDA

(2008) Michael Garland et al.   IEEE MICRO

A Compute Unified System Architecture for Graphics Clusters Incorporating Data Locality

(2008) C. Muller et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

General purpose molecular dynamics simulations fully implemented on graphics processing units

(2008) Joshua A. Anderson et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Accelerating advanced MRI reconstructions on GPUs

(2008) S.S. Stone et al.   JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING

A performance study of general-purpose applications on graphics processors using CUDA

(2008) Shuai Che et al.   JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING

Non-rigid Registration for Large Sets of Microscopic Images on Graphics Processors

(2008) Antonio Ruiz et al.   Journal of Signal Processing Systems for Signal Image and Video Technology

Real-time Visual Tracker by Stream Processing

(2008) Oscar Mateo Lozano et al.   Journal of Signal Processing Systems for Signal Image and Video Technology

Performance evaluation of image processing algorithms on the GPU

(2008) Daniel Castaño-Díez et al.   JOURNAL OF STRUCTURAL BIOLOGY

On modelling of anisotropic viscoelasticity for soft tissue simulation: Numerical solution and GPU execution

(2008) Z.A. Taylor et al.   MEDICAL IMAGE ANALYSIS

High performance computing for deformable image registration: Towards a new paradigm in adaptive radiotherapy

(2008) Sanjiv S. Samant et al.   MEDICAL PHYSICS

Harvesting graphics power for MD simulations

(2008) J.A. van Meel et al.   MOLECULAR SIMULATION

Parallel algorithm for solving Kepler’s equation on Graphics Processing Units: Application to analysis of Doppler exoplanet searches

(2008) Eric B. Ford   NEW ASTRONOMY

High performance direct gravitational N-body simulations on graphics processing units II: An implementation in CUDA

(2007) Robert G. Belleman et al.   NEW ASTRONOMY