Mesoscopic models for DNA stretching under force: New results and comparison with experiments

Strand diffusion-limited closure of denaturation bubbles in DNA

(2012) Anil Kumar Dasanna et al.   EPL

Two distinct overstretched DNA structures revealed by single-molecule thermodynamics measurements

(2012) X. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Three-State Model with Loop Entropy for the Overstretching Transition of DNA

(2010) Thomas R. Einert et al.   BIOPHYSICAL JOURNAL

Stretching single polypeptides: The effect of rotational constraints in the backbone

(2010) F. Hanke et al.   EPL

Transition dynamics and selection of the distinct S-DNA and strand unpeeling modes of double helix overstretching

(2010) Hongxia Fu et al.   NUCLEIC ACIDS RESEARCH

Two distinct overstretched DNA states

(2010) Hongxia Fu et al.   NUCLEIC ACIDS RESEARCH

Intrinsic and force-generated cooperativity in a theory of DNA-bending proteins

(2010) Houyin Zhang et al.   PHYSICAL REVIEW E

Supercoiling Induces Denaturation Bubbles in Circular DNA

(2010) Jae-Hyung Jeon et al.   PHYSICAL REVIEW LETTERS

Biophysical characterization of DNA binding from single molecule force measurements

(2010) Kathy R. Chaurasiya et al.   Physics of Life Reviews

Deforming DNA: From Physics to Biology

(2009) Chantal Prévost et al.   CHEMPHYSCHEM

Stretching of a single-stranded DNA: Evidence for structural transition

(2009) Garima Mishra et al.   PHYSICAL REVIEW E

Peeling back the mystery of DNA overstretching

(2009) M. C. Williams et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging

(2009) J. van Mameren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Force Balance Measurements Reveal that Double-Stranded DNA Unbinds Under Force in Rate-Dependent Pathways

(2008) Christian H. Albrecht et al.   BIOPHYSICAL JOURNAL

Folding and unfolding single RNA molecules under tension

(2008) Michael T Woodside et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Coupling between denaturation and chain conformations in DNA: stretching, bending, torsion and finite size effects

(2008) Manoel Manghi et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy

(2008) Keir C Neuman et al.   NATURE METHODS

Thermal denaturation of fluctuating finite DNA chains: The role of bending rigidity in bubble nucleation

(2008) John Palmeri et al.   PHYSICAL REVIEW E

Effect of external stress on the thermal melting of DNA

(2008) Joseph Rudnick et al.   PHYSICAL REVIEW E

Denaturation Transition of Stretched DNA

(2008) Andreas Hanke et al.   PHYSICAL REVIEW LETTERS

There and (Slowly) Back Again: Entropy-Driven Hysteresis in a Model of DNA Overstretching

(2007) Stephen Whitelam et al.   BIOPHYSICAL JOURNAL