Systems biology: Leading the revolution in ecotoxicology

Fathead minnow steroidogenesis: in silico analyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk

(2010) Jason E Shoemaker et al.   BMC Systems Biology

Reverse engineering adverse outcome pathways

(2010) Edward J. Perkins et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Vision & strategy: Predictive ecotoxicology in the 21st century

(2010) Daniel L. Villeneuve et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite

(2010) Arun Rawat et al.   PHYSIOLOGICAL GENOMICS

Inferring Gene Networks: Dream or Nightmare?

(2009) Angela Baralla et al.   Annals of the New York Academy of Sciences

Proteomic study of the effects of microcystin-LR on organelle and membrane proteins in medaka fish liver

(2009) Mélodie Malécot et al.   AQUATIC TOXICOLOGY

Liver proteome response of largemouth bass (Micropterus salmoides) exposed to several environmental contaminants: Potential insights into biomarker development

(2009) Brian C. Sanchez et al.   AQUATIC TOXICOLOGY

Endocrine disrupting chemicals in fish: Developing exposure indicators and predictive models of effects based on mechanism of action

(2009) Gerald T. Ankley et al.   AQUATIC TOXICOLOGY

Hepatic transcriptomic and metabolomic responses in the Stickleback (Gasterosteus aculeatus) exposed to ethinyl-estradiol

(2009) Ioanna Katsiadaki et al.   AQUATIC TOXICOLOGY

Site-specific impacts on gene expression and behavior in fathead minnows (Pimephales promelas) exposed in situ to streams adjacent to sewage treatment plants

(2009) Natàlia Garcia-Reyero et al.   BMC BIOINFORMATICS

Gene expression responses in male fathead minnows exposed to binary mixtures of an estrogen and antiestrogen

(2009) Natalia Garcia-Reyero et al.   BMC GENOMICS

A biology-based approach for mixture toxicity of multiple endpoints over the life cycle

(2009) Tjalling Jager et al.   ECOTOXICOLOGY

Sublethal toxicant effects with dynamic energy budget theory: model formulation

(2009) Erik B. Muller et al.   ECOTOXICOLOGY

Expression Signatures for a Model Androgen and Antiandrogen in the Fathead Minnow (Pimephales promelas) Ovary

(2009) Natàlia Garcia-Reyero et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biomarker Discovery and Transcriptomic Responses inDaphnia magnaexposed to Munitions Constituents

(2009) Natàlia Garcia-Reyero et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Hepatic Transcriptomic and Metabolomic Responses in the Stickleback (Gasterosteus aculeatus) Exposed to Environmentally Relevant Concentrations of Dibenzanthracene

(2009) Tim D. Williams et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Identifying Health Impacts of Exposure to Copper Using Transcriptomics and Metabolomics in a Fish Model

(2009) Eduarda M. Santos et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

TESTING AND APPLYING A FISH VITELLOGENESIS MODEL TO EVALUATE LABORATORY AND FIELD BIOMARKERS OF ENDOCRINE DISRUPTION IN ATLANTIC CROAKER (MICROPOGONIAS UNDULATUS) EXPOSED TO HYPOXIA

(2009) Cheryl A. Murphy et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Towards functional genomics in fish using quantitative proteomics

(2009) Christopher J. Martyniuk et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Quantitative Proteomic Profiles of Androgen Receptor Signaling in the Liver of Fathead Minnows (Pimephales promelas)

(2009) Christopher J. Martyniuk et al.   JOURNAL OF PROTEOME RESEARCH

Applications of genome-scale metabolic reconstructions

(2009) Matthew A Oberhardt et al.   Molecular Systems Biology

A gene regulatory network directed by zebrafish No tail accounts for its roles in mesoderm formation

(2009) R. H. Morley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Computational Model of the Hypothalamic-Pituitary-Gonadal Axis in Male Fathead Minnows Exposed to 17α-Ethinylestradiol and 17β-Estradiol

(2009) Karen H. Watanabe et al.   TOXICOLOGICAL SCIENCES

Protein Profiles in Zebrafish (Danio rerio) Embryos Exposed to Perfluorooctane Sulfonate

(2009) Xiongjie Shi et al.   TOXICOLOGICAL SCIENCES

Relationship of plasma sex steroid concentrations in female fathead minnows to reproductive success and population status

(2008) Gerald T. Ankley et al.   AQUATIC TOXICOLOGY

Transcriptomic responses of European flounder (Platichthys flesus) to model toxicants

(2008) T WILLIAMS et al.   AQUATIC TOXICOLOGY

Hepatic transcriptomic profiles of European flounder (Platichthys flesus) from field sites and computational approaches to predict site from stress gene responses following exposure to model toxicants

(2008) F FALCIANI et al.   AQUATIC TOXICOLOGY

Modeling larval fish behavior: Scaling the sublethal effects of methylmercury to population-relevant endpoints☆

(2008) C MURPHY   AQUATIC TOXICOLOGY

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models

(2008) Simon Rogers et al.   BIOINFORMATICS

A novel signaling pathway impact analysis

(2008) Adi Laurentiu Tarca et al.   BIOINFORMATICS

Molecular targets of TBBPA in zebrafish analysed through integration of genomic and proteomic approaches

(2008) Marijke De Wit et al.   CHEMOSPHERE

Investigating Compensation and Recovery of Fathead Minnow (Pimephales promelas) Exposed to 17α-Ethynylestradiol with Metabolite Profiling

(2008) D. R. Ekman et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

International NMR-Based Environmental Metabolomics Intercomparison Exercise

(2008) Mark R. Viant et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

THE EXTRAPOLATION PROBLEM AND HOW POPULATION MODELING CAN HELP

(2008) Valery E. Forbes et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Construction of a robust microarray from a non-model species largemouth bass, Micropterus salmoides (Lacèpede), using pyrosequencing technology

(2008) N. Garcia-Reyero et al.   JOURNAL OF FISH BIOLOGY

Contributions from metabolomics to fish research

(2008) Linda M. Samuelsson et al.   Molecular BioSystems

Recent developments in environmental metabolomics

(2008) Mark R. Viant   Molecular BioSystems

A multi-analytical approach for metabolomic profiling of zebrafish (Danio rerio) livers

(2008) Eng Shi Ong et al.   Molecular BioSystems

Learning biological networks: from modules to dynamics

(2008) Richard Bonneau   Nature Chemical Biology

Systems Biology and Mode of Action Based Risk Assessment

(2008) Stephen W. Edwards et al.   TOXICOLOGICAL SCIENCES