Entropy and Information Approaches to Genetic Diversity and its Expression: Genomic Geography

Prioritizing GWAS Results: A Review of Statistical Methods and Recommendations for Their Application

(2010) Rita M. Cantor et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Applications of the principle of maximum entropy: from physics to ecology

(2010) Jayanth R Banavar et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Counterpoint: Data first

(2010) Todd Golub   NATURE

Point: Hypotheses first

(2010) Robert Weinberg   NATURE

Fitness flux and ubiquity of adaptive evolution

(2010) V. Mustonen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A New Phylogenetic Diversity Measure Generalizing the Shannon Index and Its Application to Phyllostomid Bats

(2009) Benjamin Allen et al.   AMERICAN NATURALIST

Information-theoretic gene-gene and gene-environment interaction analysis of quantitative traits

(2009) Pritam Chanda et al.   BMC GENOMICS

Information flow during gene activation by signaling molecules: ethylene transduction in Arabidopsis cells as a study system

(2009) José Díaz et al.   BMC Systems Biology

Partitioning diversity for conservation analyses

(2009) Lou Jost et al.   DIVERSITY AND DISTRIBUTIONS

Hierarchical partitioning of evolutionary and ecological patterns in the organization of phylogenetically-structured species assemblages: application to rockfish (genus:Sebastes) in the Southern California Bight

(2009) Sandrine Pavoine et al.   ECOLOGY LETTERS

Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history

(2009) Marc W. Cadotte et al.   ECOLOGY LETTERS

Maximum Entropy Production as an Inference Algorithm that Translates Physical Assumptions into Macroscopic Predictions: Don’t Shoot the Messenger

(2009) Roderick Dewar   Entropy

A multilocus linkage disequilibrium measure based on mutual information theory and its applications

(2009) Lei Zhang et al.   GENETICA

Measuring and Detecting Molecular Adaptation in Codon Usage Against Nonsense Errors During Protein Translation

(2009) Michael A. Gilchrist et al.   GENETICS

On the application of statistical physics to evolutionary biology

(2009) N.H. Barton et al.   JOURNAL OF THEORETICAL BIOLOGY

Partitioning of functional diversity reveals the scale and extent of trait convergence and divergence

(2009) Francesco de Bello et al.   JOURNAL OF VEGETATION SCIENCE

GSTis still a useful measure of genetic differentiation - a comment on Jost'sD

(2009) NILS RYMAN et al.   MOLECULAR ECOLOGY

Dvs.GST: Response to Heller and Siegismund (2009) and Ryman and Leimar (2009)

(2009) LOU JOST   MOLECULAR ECOLOGY

Relationship between three measures of genetic differentiationGST,DESTandG’ST: how wrong have we been?

(2009) R. HELLER et al.   MOLECULAR ECOLOGY

Detecting gene–gene interactions that underlie human diseases

(2009) Heather J Cordell   NATURE REVIEWS GENETICS

Evolutionary dynamics on rugged fitness landscapes: Exact dynamics and information theoretical aspects

(2009) David B. Saakian et al.   PHYSICAL REVIEW E

Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method

(2009) G. A. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inferring species interactions in tropical forests

(2009) I. Volkov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biological diversity: Distinct distributions can lead to the maximization of Rao’s quadratic entropy

(2009) Sandrine Pavoine et al.   THEORETICAL POPULATION BIOLOGY

Linkage Disequilibrium and Its Expectation in Human Populations

(2009) John A. Sved   Twin Research and Human Genetics

Dispersal limitations, rather than bottlenecks or habitat specificity, can restrict the distribution of rare and endemic rainforest trees

(2008) Maurizio Rossetto et al.   AMERICAN JOURNAL OF BOTANY

Population genetic diversity in the polyploid complex of wheatgrasses using isoenzyme and RAPD data

(2008) A. Refoufi et al.   BIOLOGIA PLANTARUM

A Two-Stage Probabilistic Approach to Multiple-Community Similarity Indices

(2008) Anne Chao et al.   BIOMETRICS

Gene-Centric Genomewide Association Study via Entropy

(2008) Y. Cui et al.   GENETICS

AMBIENCE: A Novel Approach and Efficient Algorithm for Identifying Informative Genetic and Environmental Associations With Complex Phenotypes

(2008) P. Chanda et al.   GENETICS

Statistical Mechanics and the Evolution of Polygenic Quantitative Traits

(2008) N. H. Barton et al.   GENETICS

Scaling patterns of plankton diversity: a study of ciliates in a tropical coastal lagoon

(2008) Celia Bulit et al.   HYDROBIOLOGIA

Interpreting and estimating measures of community phylogenetic structuring

(2008) Olivier J. Hardy et al.   JOURNAL OF ECOLOGY

Two-stage designs to identify the effects of SNP combinations on complex diseases

(2008) Guolian Kang et al.   JOURNAL OF HUMAN GENETICS

GSTand its relatives do not measure differentiation

(2008) LOU JOST   MOLECULAR ECOLOGY

Linkage disequilibrium — understanding the evolutionary past and mapping the medical future

(2008) Montgomery Slatkin   NATURE REVIEWS GENETICS

Evolution of Complex Modular Biological Networks

(2008) Arend Hintze et al.   PLoS Computational Biology

Mutual information reveals variation in temperature-dependent sex determination in response to environmental fluctuation, lifespan and selection

(2008) L. E Schwanz et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Statistical mechanics unifies different ecological patterns

(2007) Roderick C. Dewar et al.   JOURNAL OF THEORETICAL BIOLOGY