Article
Chemistry, Analytical
Jia Yi, Yueqing Shen, Yi Yang, Chengpin Shen, Baohong Liu, Liang Qiao, Yan Wang
Summary: By characterizing gingival crevicular fluid (GCF) sediments and identifying potential protein biomarkers using mass spectrometry techniques, this study has contributed to the early diagnosis of periodontitis and understanding of its pathogenesis. The identified biomarkers hold potential value for accurate monitoring and can be utilized by non-specialists for widespread screening.
Review
Chemistry, Analytical
Negin Fasih Ramandi, Mohammad Faranoush, Alireza Ghassempour, Hassan Y. Aboul-Enein
Summary: The recent success in studying the proteome as a source of biomarkers has revolutionized our understanding of leukemia. The use of mass spectrometry techniques to identify differentially expressed proteins has led to improved diagnosis, prognosis, and treatment strategies for leukemia. This review focuses on the use of various ionization sources and mass analyzers in monitoring different types of leukemia, with MALDI-TOF MS identified as a quick and reliable method for protein analysis. Additionally, the review classifies over 400 proteins and identifies specific biomarkers for acute myeloid leukemia (AML), acute lymphoblastic leukemia (ALL), and other stages of leukemia for future studies.
CRITICAL REVIEWS IN ANALYTICAL CHEMISTRY
(2022)
Article
Plant Sciences
Meenakshi Arya, Satya Prakash, Yaiphabi Sougrakpam, Renu Deswal
Summary: The study identified leaf cuticle proteins from Brassica juncea using organic solvents, analyzing them through gel-based and quantitative shotgun proteomics. Most of the proteins had signal peptides supporting extracellular localization and were predicted to be involved in various activities such as defense response, fatty acid binding, and nutrient reservoir activity. The study also explored the roles of specific proteins like Myrosinase and GDSL esterase/lipase ESM1 in cuticle structuring and defense, as well as the glucosinolate-myrosinase system, PTM crosstalk, and antifreeze activity as stress adaptive strategies in B. juncea.
PLANT PHYSIOLOGY AND BIOCHEMISTRY
(2021)
Article
Food Science & Technology
Xue Li, Xiaorong Deng, Xin Guo, Yabo Wei, Yunfeng Zhao, Xiaobing Guo, Xinrong Zhu, Jian Zhang, Ling Hu
Summary: The present study investigates the freshness indicator protein of Coregonus peled and the effects of oxidation on the quality of fish during 4 degrees C storage. A total of 382 differential proteins were identified, and 20 proteins related to oxidation were found to have the potential as biomarkers for protein oxidative damage. Actin was identified as an indicator for fish softening during postmortem storage. The changes in protein structure and biomarkers were influenced by oxidation. Bioinformatics analysis suggested that differentially expressed proteins participated in the metabolic pathway during 4 degrees C storage.
LWT-FOOD SCIENCE AND TECHNOLOGY
(2022)
Article
Environmental Sciences
Probir Kumar Mittra, Swapan Kumar Roy, Md Atikur Rahman, Mollah Naimuzzaman, Soo-Jeong Kwon, Sung Ho Yun, Kun Cho, Tomoyuki Katsube-Tanaka, Tatsuhiko Shiraiwa, Sun-Hee Woo
Summary: This study investigates the alleviation of cadmium (Cd) toxicity in Brassica using citric acid (CA) through a proteome approach. The results show significant alteration in the global proteome level under Cd toxicity in Brassica, with or without CA supplementation. Several candidate proteins involved in antioxidant defense and sulfur assimilation-related Cd-detoxification process were identified. These findings provide new insights into CA-mediated Cd-toxicity alleviation in Brassica and its potential application in enhancing heavy metal tolerance in oilseed crops.
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
(2023)
Article
Agriculture, Dairy & Animal Science
Prasad M. Govindaiah, Naveena B. Maheswarappa, Rituparna Banerjee, Bidyut Prava Mishra, Balaji B. Manohar, Sowmya Dasoju
Summary: This study evaluated the impact of different slaughter methods on meat quality and various biochemical and hormonal parameters. The results showed that electrical stunning had some effect on meat quality, while there were no significant differences in blood parameters between the non-stunning and stunning groups. Proteomic analysis identified differentially abundant proteins between the two groups.
Review
Microbiology
Eva Torres-Sangiao, Cristina Leal Rodriguez, Carlos Garcia-Riestra
Summary: Mass spectrometry (MS) has emerged as a powerful tool in clinical microbiology for rapid and reliable microbial identification. Its cost- and time-effective advantages make it a promising alternative to conventional methods, offering potential applications in early diagnosis and appropriate treatment of severe infections.
Article
Plant Sciences
Ruiqin Ji, Shiqi Gao, Qing Bi, Yilian Wang, Mingcan Lv, Wenjie Ge, Hui Feng
Summary: Differential expression of proteins in Chinese cabbage roots infected by clubroot disease was observed, with some proteins involved in the salicylic acid signaling pathway. Increased disease resistance was observed after salicylic acid treatment, indicating stimulation of this pathway in the interaction between Chinese cabbage and Plasmodiophora brassicae.
JOURNAL OF PLANT GROWTH REGULATION
(2021)
Article
Plant Sciences
Liangqian Yu, Sidra Iqbal, Yuting Zhang, Guofang Zhang, Usman Ali, Shaoping Lu, Xuan Yao, Liang Guo
Summary: The study found that a large number of proteins in Brassica napus undergo sulphenylation during salt stress, with many proteins localizing to chloroplasts and cytoplasm and enzyme activity affected. Differential sulphenylated proteins indicate that metabolic processes such as photosynthesis and glycolysis play important roles in the response.
PLANT CELL AND ENVIRONMENT
(2021)
Article
Engineering, Environmental
FuKai Li, Min Wang, Jian Zhou, MengRui Yang, TongTong Wang
Summary: The novel Fe3O4@MWCNTs@ε-PL@BA nanocomposites exhibit excellent ionization efficiency and low-background noise interference for MALDI-TOF-MS determination of low molecular weight flavonoids. With good sensitivity and ultra-high salt tolerance, they allow for accurate detection and quantification of flavonoids in actual samples. The prepared nanocomposites have wide linear ranges, high calibration plot coefficients, and achieve good recoveries in practical food samples, making them suitable for selective and efficient capture of target flavonoids for MALDI-TOF-MS analysis.
JOURNAL OF HAZARDOUS MATERIALS
(2022)
Article
Food Science & Technology
Katrien Dierickx, Samantha Presslee, Virginia L. Harvey
Summary: This research presents an alternative proteomic technique for reliable species identification of fish specimens. The study demonstrates the efficacy of collagen peptide mass fingerprinting in identifying different tissue types of fish samples, highlighting its importance in detecting mislabelling fraud in the food chain.
Article
Biochemistry & Molecular Biology
Hafiz Muhammad Rashad Javeed, Mazhar Ali, Milan Skalicky, Fahim Nawaz, Rafi Qamar, Atique Ur Rehman, Maooz Faheem, Muhammad Mubeen, Muhammad Mohsin Iqbal, Muhammad Habib ur Rahman, Pavla Vachova, Marian Brestic, Alaa Baazeem, Ayman El Sabagh
Summary: The application of exogenous LA + MT significantly improved growth performance and physiological parameters of canola seedlings under salinity stress.
Article
Agronomy
Yue Liu, Xiaoyu Ding, Yan Lv, Yong Cheng, Chunsheng Li, Lei Yan, Shanshan Tian, Xiling Zou
Summary: Exogenous serotonin was found to alleviate salt-induced growth inhibition in rapeseed seedlings by promoting biomass accumulation, increasing antioxidant enzyme activity, and enhancing solute content. It also reduced oxidative damage and increased chlorophyll content under salinity stress, ultimately mitigating the toxic effects of salt stress on rapeseed seedlings.
Article
Chemistry, Applied
Xue Yi Tan, Azizah Misran, Leona Daniela Jeffery Daim, Benjamin Yii Chung Lau
Summary: Four methods were evaluated to extract proteins from Musang King durian pulps, with acetone-phenol method producing the best results. Differential protein analyses revealed that 15 proteins were down-regulated and 3 proteins were up-regulated after a year of frozen storage. This study indicates that frozen storage affects protein expression in various functional aspects.
Article
Biochemistry & Molecular Biology
Young-Hwan Ju, Swapan Kumar Roy, Aritra Roy Choudhury, Soo-Jeong Kwon, Ju-Young Choi, Md Atikur Rahman, Tomoyuki Katsube-Tanaka, Tatsuhiko Shiraiwa, Moon-Soon Lee, Kun Cho, Sun-Hee Woo
Summary: This study investigated the proteome changes in Brassica napus L. seedlings in response to citric acid (CA)-mediated alleviation of copper (Cu) stress, revealing that differentially abundant proteins (DAPs) were mainly involved in energy and carbohydrate metabolism, photosynthesis, protein metabolism, stress and defense, metal detoxification, and cell wall reorganization. The downregulation of chlorophyll biosynthetic proteins and increased abundance of stress and defense-related proteins suggest potential molecular mechanisms for Cu stress tolerance and phytoextraction of Cu in B. napus with CA application.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Ecology
Hakan Terzi, Mustafa Yildiz
Article
Environmental Sciences
Mustafa Yildiz, Hakan Terzi
ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY
(2016)
Article
Environmental Sciences
Hakan Terzi, Mustafa Yildiz
BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY
(2014)
Article
Ecology
Mustafa Yildiz, Hakan Terzi, Nagihan Bingul
Article
Environmental Sciences
Suleyman Cenkci, Mustafa Yildiz, Ibrahim Hakki Cigerci, Ahmet Bozdag, Hakan Terzi, Evrim Suna Arikan Terzi
ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY
(2010)
Article
Plant Sciences
Sueleyman Cenkci, Ibrahim Hakki Cigerci, Mustafa Yildiz, Cennet Ozay, Ahmet Bozdag, Hakan Terzi
ENVIRONMENTAL AND EXPERIMENTAL BOTANY
(2010)
Article
Plant Sciences
Mustafa Yildiz, Hakan Terzi
Summary: Salinity stress is a major abiotic stress factor affecting plant productivity and distribution, with halophytes like Salsola crassa showing varying degrees of salt tolerance under different salt concentrations. Physiological and proteomic changes in roots reveal different mechanisms in response to salt stress in this halophyte plant.
BRAZILIAN JOURNAL OF BOTANY
(2021)
Article
Environmental Sciences
Hakan Terzi, Mustafa Yildiz
Summary: The study found that cysteine can alleviate the adverse effects of chromium on maize seedling growth by modulating antioxidant enzyme activities and increasing endogenous cysteine content to enhance chromium tolerance. Exogenous cysteine significantly affected protein expression in root tissues, participating in various biological pathways such as stress response and protein metabolism.
ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY
(2021)
Article
Biology
Hakan Terzi, Mustafa Yildiz
Summary: The study demonstrates that sulfur supply can enhance the tolerance of maize seedling roots to chromium stress by increasing the abundance of stress defense-related proteins. This may provide new insights into the proteomic response mechanisms of plants under sulfur deficiency and chromium stress.
Article
Plant Sciences
Mustafa Yildiz, Hakan Terzi
Summary: The study demonstrates that exogenous cysteine (Cys) can reduce chromium toxicity in rapeseed by promoting plant growth, restoring antioxidant enzyme activities, and modulating defense mechanisms. Proteomic analysis reveals that Cys helps plants overcome chromium stress by modulating energy metabolism, amino acid metabolism, and defense mechanisms.
SOUTH AFRICAN JOURNAL OF BOTANY
(2021)
Article
Plant Sciences
Kubra Alp, Hakan Terzi, Mustafa Yildiz
Summary: The application of exogenous NO donor SNP was found to alleviate Cd-induced growth inhibition in barley seedlings. Proteomic analysis revealed that NO influenced various pathways, including photosynthesis and carbohydrate metabolism, protein metabolism, energy metabolism, stress defense, and signal transduction, thereby enhancing Cd tolerance in barley seedlings.
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS
(2022)
Article
Plant Sciences
Mustafa Yildiz, Fadimana Kaya, Hakan TerzI
Summary: Proteomic analysis revealed differential protein accumulation patterns between C3 and C4 plants in response to drought stress, indicating different adaptive strategies against drought between the two species.
TURKISH JOURNAL OF BOTANY
(2021)
Article
Plant Sciences
Hakan Terzi, Mustafa Yildiz
Summary: This study found that under NaCl stress, Caravel exhibited better salt tolerance, seed germination, and seedling growth compared to Sary. Proteomic analysis revealed differentially accumulated proteins involved in various processes, providing insights into the mechanisms of salt tolerance in rapeseed.
Article
Medicine, General & Internal
Mustafa Yildiz, Hakan Terzi, Saliha Handan Yildiz, Nuray Varol, Mujgan Ozdemir Erdogan, Murat Kasap, Nermin Akcali, Mustafa Solak
TURKISH JOURNAL OF MEDICAL SCIENCES
(2020)