A review of ecological models for brown trout: towards a new demogenetic model

network: A Package for Managing Relational Data inR

(2015) Carter T. Butts   Journal of Statistical Software

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

SPLATCHE2: a spatially explicit simulation framework for complex demography, genetic admixture and recombination

(2010) Nicolas Ray et al.   BIOINFORMATICS

ABCtoolbox: a versatile toolkit for approximate Bayesian computations

(2010) Daniel Wegmann et al.   BMC BIOINFORMATICS

Patterns of genetic structuring in a brown trout (Salmo trutta L.) metapopulation

(2010) Alexia Massa-Gallucci et al.   CONSERVATION GENETICS

Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches

(2010) Gordon Luikart et al.   CONSERVATION GENETICS

Genetic variation and effective population size in isolated populations of coastal cutthroat trout

(2010) Andrew R. Whiteley et al.   CONSERVATION GENETICS

Applications of landscape genetics in conservation biology: concepts and challenges

(2010) Gernot Segelbacher et al.   CONSERVATION GENETICS

Assessment of three strategies practiced by fishery managers for restoring native brown trout (Salmo trutta) populations in Northern French Alpine Streams

(2010) Arnaud Caudron et al.   ECOLOGY OF FRESHWATER FISH

NetLogo meets R: Linking agent-based models with a toolbox for their analysis

(2010) Jan C. Thiele et al.   ENVIRONMENTAL MODELLING & SOFTWARE

Disentangling stocking introgression and natural migration in brown trout: survival success and recruitment failure in populations with semi-supportive breeding

(2010) JENS WOLLEBAEK et al.   FRESHWATER BIOLOGY

An examination of genetic diversity and effective population size in Atlantic salmon populations

(2010) NATACHA NIKOLIC et al.   Genetics Research

Using evolutionary demography to link life history theory, quantitative genetics and population ecology

(2010) Tim Coulson et al.   JOURNAL OF ANIMAL ECOLOGY

Quantitative genetic parameters for wild stream-living brown trout: heritability and parental effects

(2010) D. SERBEZOV et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The genetic basis of early-life morphological traits and their relation to alternative male reproductive tactics in Atlantic salmon

(2010) D. J. PáEZ et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Phylogeographic structure of brown troutSalmo truttain Britain and Ireland: glacial refugia, postglacial colonization and origins of sympatric populations

(2010) N. J. McKeown et al.   JOURNAL OF FISH BIOLOGY

Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework

(2010) SAMUEL NEUENSCHWANDER et al.   MOLECULAR ECOLOGY

ABC as a flexible framework to estimate demography over space and time: some cons, many pros

(2010) G. BERTORELLE et al.   MOLECULAR ECOLOGY

The relative effects of habitat loss and fragmentation on population genetic variation in the red-cockaded woodpecker (Picoides borealis)

(2010) DOUGLAS J. BRUGGEMAN et al.   MOLECULAR ECOLOGY

Mating patterns and determinants of individual reproductive success in brown trout (Salmo trutta) revealed by parentage analysis of an entire stream living population

(2010) DIMITAR SERBEZOV et al.   MOLECULAR ECOLOGY

Seascape genetics along a steep cline: using genetic patterns to test predictions of marine larval dispersal

(2010) HEATHER M. GALINDO et al.   MOLECULAR ECOLOGY

Landscape influences on genetic differentiation among bull trout populations in a stream-lake network

(2010) MICHAEL H. MEEUWIG et al.   MOLECULAR ECOLOGY

Utility of computer simulations in landscape genetics

(2010) BRYAN K. EPPERSON et al.   MOLECULAR ECOLOGY

INTRODUCTION: Contributions of landscape genetics - approaches, insights, and future potential

(2010) VICTORIA L. SORK et al.   MOLECULAR ECOLOGY

Considering spatial and temporal scale in landscape-genetic studies of gene flow

(2010) COREY DEVIN ANDERSON et al.   MOLECULAR ECOLOGY

Landscape genetics: where are we now?

(2010) ANDREW STORFER et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Coupled dynamics of body mass and population growth in response to environmental change

(2010) Arpat Ozgul et al.   NATURE

Population diversity and the portfolio effect in an exploited species

(2010) Daniel E. Schindler et al.   NATURE

Dispersal and Within-Stream Spatial Population Structure of Brook Trout Revealed by Pedigree Reconstruction Analysis

(2010) Mark Hudy et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

The Maintenance of Genetic Variation Due to Asymmetric Gene Flow in Dendritic Metapopulations

(2009) Michael B. Morrissey et al.   AMERICAN NATURALIST

Molecular marker-based pedigrees for animal conservation biologists

(2009) O. R. Jones et al.   ANIMAL CONSERVATION

Molecular Estimation of Dispersal for Ecology and Population Genetics

(2009) Thomas Broquet et al.   Annual Review of Ecology Evolution and Systematics

Northern and Southern expansions of Atlantic brown trout (Salmo trutta) populations during the Pleistocene

(2009) MARTÍ CORTEY et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Stream trees: a statistical method for mapping genetic differences between populations of freshwater organisms to the sections of streams that connect them

(2009) Steven T. Kalinowski et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Management units of brown trout from Galicia (NW: Spain) based on spatial genetic structure analysis

(2009) Román Vilas et al.   CONSERVATION GENETICS

Statistical approaches in landscape genetics: an evaluation of methods for linking landscape and genetic data

(2009) Niko Balkenhol et al.   ECOGRAPHY

Eco-genetic modeling of contemporary life-history evolution

(2009) Erin S. Dunlop et al.   ECOLOGICAL APPLICATIONS

An object-oriented, individual-based approach for simulating the dynamics of genes in subdivided populations

(2009) Johnathan T. Kool   Ecological Informatics

Integral projection models for populations in temporally varying environments

(2009) Mark Rees et al.   ECOLOGICAL MONOGRAPHS

RECENT ECOLOGICAL DIVERGENCE DESPITE MIGRATION IN SOCKEYE SALMON (ONCORHYNCHUS NERKA)

(2009) Scott A. Pavey et al.   EVOLUTION

ORIGINAL ARTICLE: Eco-genetic model to explore fishing-induced ecological and evolutionary effects on growth and maturation schedules

(2009) Hui-Yu Wang et al.   Evolutionary Applications

An ecologist’s guide to the animal model

(2009) Alastair J. Wilson et al.   JOURNAL OF ANIMAL ECOLOGY

Integral projection models perform better for small demographic data sets than matrix population models: a case study of two perennial herbs

(2009) Satu Ramula et al.   JOURNAL OF APPLIED ECOLOGY

Identifying future research needs in landscape genetics: where to from here?

(2009) Niko Balkenhol et al.   LANDSCAPE ECOLOGY

Dynamic micro-geographic and temporal genetic diversity in vertebrates: the case of lake-spawning populations of brown trout (Salmo trutta)

(2009) JAN HEGGENES et al.   MOLECULAR ECOLOGY

Statistical methods in spatial genetics

(2009) GILLES GUILLOT et al.   MOLECULAR ECOLOGY

pedagog: software for simulating eco-evolutionary population dynamics

(2009) JASON A. COOMBS et al.   Molecular Ecology Resources

A practical guide to methods of parentage analysis

(2009) ADAM G. JONES et al.   Molecular Ecology Resources

cdpop: A spatially explicit cost distance population genetics program

(2009) ERIN L. LANDGUTH et al.   Molecular Ecology Resources

COLONY: a program for parentage and sibship inference from multilocus genotype data

(2009) OWEN R. JONES et al.   Molecular Ecology Resources

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

Linking the hydraulic world of individual organisms to ecological processes: Putting ecology into ecohydraulics

(2009) Jill Lancaster et al.   RIVER RESEARCH AND APPLICATIONS

Modelling brown trout spatial requirements through physical habitat simulations

(2009) D. Ayllón et al.   RIVER RESEARCH AND APPLICATIONS

Loss of genetic variation and effective population size of Kirikuchi charr: implications for the management of small, isolated salmonid populations

(2008) T. Sato et al.   ANIMAL CONSERVATION

Distribution modelling to guide stream fish conservation: an example using the mountain sucker in the Black Hills National Forest, USA

(2008) Daniel C. Dauwalter et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Forward-time simulations of non-random mating populations using simuPOP

(2008) B. Peng et al.   BIOINFORMATICS

Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation

(2008) Jean-Marie Cornuet et al.   BIOINFORMATICS

A flexible forward simulator for populations subject to selection and demography

(2008) R. D. Hernandez   BIOINFORMATICS

quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation

(2008) S. Neuenschwander et al.   BIOINFORMATICS

Life history and large-scale habitat use of brown trout (Salmo trutta) and brook trout (Salvelinus fontinalis) — implications for species replacement patterns

(2008) Gunnar Öhlund et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Influence of landscape on resident and anadromous life history types of Oncorhynchus mykiss

(2008) Shawn R. Narum et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Spatio-temporal genetic structuring of brown trout (Salmo trutta L.) populations within the River Luga, northwest Russia

(2008) Paula K. Lehtonen et al.   CONSERVATION GENETICS

Optimisation of a fuzzy physical habitat model for spawning European grayling (Thymallus thymallus L.) in the Aare river (Thun, Switzerland)

(2008) Ans M. Mouton et al.   ECOLOGICAL MODELLING

Overview of the model types available for development of ecological models

(2008) Sven Erik Jørgensen   ECOLOGICAL MODELLING

Increasing experimental approaches in stream trout research – 1987–2006

(2008) T. G. Northcote et al.   ECOLOGY OF FRESHWATER FISH

Exploring the relative influence of biotic interactions and environmental conditions on the abundance and distribution of exotic brown trout (Salmo trutta) in a high mountain stream

(2008) P. Budy et al.   ECOLOGY OF FRESHWATER FISH

ORIGINAL ARTICLE: Increase in maturation size after the closure of a high seas gillnet fishery on hatchery-reared chum salmon Oncorhynchus keta

(2008) Masa-aki Fukuwaka et al.   Evolutionary Applications

ORIGINAL ARTICLE: The impact of fishing-induced mortality on the evolution of alternative life-history tactics in brook charr

(2008) Véronique Thériault et al.   Evolutionary Applications

ORIGINAL ARTICLE: Changes in selection and evolutionary responses in migratory brown trout following the construction of a fish ladder

(2008) Thrond Oddvar Haugen et al.   Evolutionary Applications

Bridging the gap between the genotype and the phenotype: linking genetic variation, selection and adaptation in fishes

(2008) Kerry A Naish et al.   FISH AND FISHERIES

Genetic structure and demographic history of brown trout (Salmo trutta) populations from the southern Balkans

(2008) APOSTOLOS P. APOSTOLIDIS et al.   FRESHWATER BIOLOGY

Hierarchical gene diversity analysis and its application to brown trout population data

(2008) RANAJIT CHAKRABORTY et al.   HEREDITAS

Regulated discharge produces substantial demographic changes on four typical fish species of a small salmonid stream

(2008) Michaël Ovidio et al.   HYDROBIOLOGIA

Genetic divergence between sympatric Arctic charrSalvelinus alpinusmorphs in Gander Lake, Newfoundland: roles of migration, mutation and unequal effective population sizes

(2008) D. Gomez-Uchida et al.   JOURNAL OF FISH BIOLOGY

Parentage Analysis with Few Contributing Breeders: Validation and Improvement

(2008) P. Duchesne et al.   JOURNAL OF HEREDITY

Evidence for fish dispersal from spatial analysis of stream network topology

(2008) Nathaniel P. Hitt et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Decline of brown trout (Salmo trutta) in Switzerland – How to assess potential causes in a multi-factorial cause–effect relationship

(2008) Patricia Burkhardt-Holm   MARINE ENVIRONMENTAL RESEARCH

Demographics and landscape features determine intrariver population structure in Atlantic salmon (Salmo salarL.): the case of the River Moy in Ireland

(2008) E. DILLANE et al.   MOLECULAR ECOLOGY

Landscape genetics and hierarchical genetic structure in Atlantic salmon: the interaction of gene flow and local adaptation

(2008) MÉLANIE DIONNE et al.   MOLECULAR ECOLOGY

ldne: a program for estimating effective population size from data on linkage disequilibrium

(2008) ROBIN S. WAPLES et al.   Molecular Ecology Resources

The role of density-dependent individual growth in the persistence of freshwater salmonid populations

(2008) Simone Vincenzi et al.   OECOLOGIA

Linking dendritic network structures to population demogenetics: The downside of connectivity

(2008) Jacques Labonne et al.   OIKOS

Long-term simulations of the dynamics of trout populations on river reaches bypassed by hydroelectric installations-analysis of the impact of different hydrological scenarios

(2008) V. Gouraud et al.   RIVER RESEARCH AND APPLICATIONS

Spatial distribution and geomorphic condition of fish habitat in streams: an analysis using hydraulic modelling and geostatistics

(2008) Jessica S. Clark et al.   RIVER RESEARCH AND APPLICATIONS

Spawning habitat of Atlantic salmon and brown trout: general criteria and intragravel factors

(2008) P. Louhi et al.   RIVER RESEARCH AND APPLICATIONS

State–space models of individual animal movement

(2008) T PATTERSON et al.   TRENDS IN ECOLOGY & EVOLUTION

Coalescent genealogy samplers: windows into population history

(2008) Mary K. Kuhner   TRENDS IN ECOLOGY & EVOLUTION

Potential factors controlling the population viability of newly introduced endangered marble trout populations

(2007) Simone Vincenzi et al.   BIOLOGICAL CONSERVATION

Variation in growth and aggression of juvenile brown trout (Salmo trutta) from upstream and downstream reaches of the same river

(2007) E. A. Kristensen et al.   ECOLOGY OF FRESHWATER FISH

COMPUTER PROGRAMS: onesamp: a program to estimate effective population size using approximate Bayesian computation

(2007) DAVID A. TALLMON et al.   Molecular Ecology Resources

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources

Dispersal, demography and spatial population models for conservation and control management

(2007) Eelke Jongejans et al.   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS

Long-term temporal changes of genetic composition in brown trout (Salmo trutta L.) populations inhabiting an unstable environment

(2003) Siri Østergaard et al.   MOLECULAR ECOLOGY