Abiotic stress tolerance and competition-related traits underlie phylogenetic clustering in soil bacterial communities

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Plant phylodiversity enhances soil microbial productivity in facilitation-driven communities

(2013) José Antonio Navarro-Cano et al.   OECOLOGIA

Rethinking Community Assembly through the Lens of Coexistence Theory

(2012) J. HilleRisLambers et al.   Annual Review of Ecology Evolution and Systematics

Bayesian models for comparative analysis integrating phylogenetic uncertainty

(2012) Pierre de Villemereuil et al.   BMC EVOLUTIONARY BIOLOGY

Functional species pool framework to test for biotic effects on community assembly

(2012) Francesco de Bello et al.   ECOLOGY

Patterns in the distribution of soil bacterial 16S rRNA gene sequences from different regions of Antarctica

(2012) C.W. Chong et al.   GEODERMA

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance

(2012) Steven W. Kembel et al.   PLoS Computational Biology

Diversity and structure of soil bacterial communities associated with vultures in an African savanna

(2012) Holly H. Ganz et al.   Ecosphere

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

The Jungle of Methods for Evaluating Phenotypic and Phylogenetic Structure of Communities

(2010) Juli G. Pausas et al.   BIOSCIENCE

Selectivity in Mammalian Extinction Risk and Threat Types: a New Measure of Phylogenetic Signal Strength in Binary Traits

(2010) SUSANNE A. FRITZ et al.   CONSERVATION BIOLOGY

Opposing effects of competitive exclusion on the phylogenetic structure of communities

(2010) Margaret M. Mayfield et al.   ECOLOGY LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Traits, Habitats, and Clades: Identifying Traits of Potential Importance to Environmental Filtering

(2009) Margaret M. Mayfield et al.   AMERICAN NATURALIST

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Iamia majanohamensis gen. nov., sp. nov., an actinobacterium isolated from sea cucumber Holothuria edulis, and proposal of Iamiaceae fam. nov.

(2009) M. Kurahashi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Fumarole-Supported Islands of Biodiversity within a Hyperarid, High-Elevation Landscape on Socompa Volcano, Puna de Atacama, Andes

(2008) E. K. Costello et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species

(2008) Jonathan B. Losos   ECOLOGY LETTERS

Phylogenetic Analysis of Nitrite, Nitric Oxide, and Nitrous Oxide Respiratory Enzymes Reveal a Complex Evolutionary History for Denitrification

(2008) Christopher M. Jones et al.   MOLECULAR BIOLOGY AND EVOLUTION

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity

(2008) J. A. Bryant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Biogeography: From Taxonomy to Traits

(2008) J. L. Green et al.   SCIENCE