TreeTFDB: An Integrative Database of the Transcription Factors from Six Economically Important Tree Crops for Functional Predictions and Comparative and Functional Genomics

Contribution of Genomics to Gene Discovery in Plant Abiotic Stress Responses

(2012) Yun Ma et al.   Molecular Plant

Tissue-Specific Whole Transcriptome Sequencing in Castor, Directed at Understanding Triacylglycerol Lipid Biosynthetic Pathways

(2012) Adrian P. Brown et al.   PLoS One

Multiple Histone Methyl and Acetyltransferase Complex Components Bind the HLA-DRA Gene

(2012) Nancy M. Choi et al.   PLoS One

Brassinosteroid Signaling Network and Regulation of Photomorphogenesis

(2011) Zhi-Yong Wang et al.   Annual Review of Genetics

In Silico Analysis of Transcription Factor Repertoires and Prediction of Stress-Responsive Transcription Factors from Six Major Gramineae Plants

(2011) K. Mochida et al.   DNA RESEARCH

Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

(2011) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana

(2011) C. Zou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SoyDB: a knowledge database of soybean transcription factors

(2010) Zheng Wang et al.   BMC PLANT BIOLOGY

Sequence Analysis of the Genome of an Oil-Bearing Tree, Jatropha curcas L.

(2010) S. Sato et al.   DNA RESEARCH

Functional genomics of soybean for improvement of productivity in adverse conditions

(2010) Lam-Son Phan Tran et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-Wide Phylogenetic Comparative Analysis of Plant Transcriptional Regulation: A Timeline of Loss, Gain, Expansion, and Correlation with Complexity

(2010) Daniel Lang et al.   Genome Biology and Evolution

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

(2010) He Zhang et al.   NUCLEIC ACIDS RESEARCH

Genomics and Bioinformatics Resources for Crop Improvement

(2010) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Progress studies of drought-responsive genes in rice

(2010) Toto Hadiarto et al.   PLANT CELL REPORTS

LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors

(2009) Keiichi Mochida et al.   BIOINFORMATICS

In silico Analysis of Transcription Factor Repertoire and Prediction of Stress Responsive Transcription Factors in Soybean

(2009) K. Mochida et al.   DNA RESEARCH

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

cis-Element- and Transcriptome-Based Screening of Root Hair-Specific Genes and Their Functional Characterization in Arabidopsis

(2009) S.-K. Won et al.   PLANT PHYSIOLOGY

TriFLDB: A Database of Clustered Full-Length Coding Sequences from Triticeae with Applications to Comparative Grass Genomics

(2009) K. Mochida et al.   PLANT PHYSIOLOGY

Unraveling Transcriptional Control in Arabidopsis Using cis-Regulatory Elements and Coexpression Networks

(2009) K. Vandepoele et al.   PLANT PHYSIOLOGY

TOBFAC: the database of tobacco transcription factors

(2008) Paul J Rushton et al.   BMC BIOINFORMATICS

DATFAP: A Database of Primers and Homology Alignments for Transcription Factors from 13 Plant Species

(2008) Jakob Fredslund   BMC GENOMICS

Pfam 10 years on: 10 000 families and still growing

(2008) S. J. Sammut et al.   BRIEFINGS IN BIOINFORMATICS

Arabidopsis DREB2A-Interacting Proteins Function as RING E3 Ligases and Negatively Regulate Plant Drought Stress-Responsive Gene Expression

(2008) F. Qin et al.   PLANT CELL

GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses

(2008) A. Yilmaz et al.   PLANT PHYSIOLOGY