Transcriptome Analysis of a North American Songbird, Melospiza melodia

Next generation sequencing and analysis of a conserved transcriptome of New Zealand's kiwi

(2011) Sankar Subramanian et al.   BMC EVOLUTIONARY BIOLOGY

Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing

(2011) Anna W Santure et al.   BMC GENOMICS

Digital gene expression analysis of the zebra finch genome

(2010) Robert Ekblom et al.   BMC GENOMICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Interpopulation patterns of divergence and selection across the transcriptome of the copepod Tigriopus californicus

(2010) FELIPE S. BARRETO et al.   MOLECULAR ECOLOGY

Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species

(2010) AXEL KÜNSTNER et al.   MOLECULAR ECOLOGY

Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow

(2010) JOCHEN B. W. WOLF et al.   MOLECULAR ECOLOGY

Evolutionary stasis: the stable chromosomes of birds

(2010) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

A golden age for evolutionary genetics? Genomic studies of adaptation in natural populations

(2010) Nicola J. Nadeau et al.   TRENDS IN GENETICS

Nonlinear Dynamics of Nonsynonymous (dN) and Synonymous (dS) Substitution Rates Affects Inference of Selection

(2009) Jochen B. W. Wolf et al.   Genome Biology and Evolution

Estimates of Positive Darwinian Selection Are Inflated by Errors in Sequencing, Annotation, and Alignment

(2009) Adrian Schneider et al.   Genome Biology and Evolution

Carbon source accounting for fish using combined DNA and stable isotope analyses in a regulated lowland river weir pool

(2009) CHRISTOPHER M. HARDY et al.   MOLECULAR ECOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods

(2009) Adrian M. Altenhoff et al.   PLoS Computational Biology

Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing

(2008) Christopher W. Wheat   GENETICA

Pyrobayes: an improved base caller for SNP discovery in pyrosequences

(2008) Aaron R Quinlan et al.   NATURE METHODS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

The Song Sparrow,Melospiza melodia,as a ring species: Patterns of geographic variation, a revision of subspecies, and implications for speciation

(2008) Michael A. Patten et al.   SYSTEMATICS AND BIODIVERSITY

Identification and validation of housekeeping genes as internal control for gene expression in an intravenous LPS inflammation model in chickens

(2008) S. De Boever et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

The Population Genetics of dN/dS

(2008) Sergey Kryazhimskiy et al.   PLoS Genetics