The human microbiome and autoimmunity

Transcriptome Analysis Reveals Human Cytomegalovirus Reprograms Monocyte Differentiation toward an M1 Macrophage

(2014) G. Chan et al.   JOURNAL OF IMMUNOLOGY

A Comparison of Self-Reported Analgesic Use and Detection of Urinary Ibuprofen and Acetaminophen Metabolites by Means of Metabonomics: The INTERMAP Study

(2012) R. L. Loo et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

The Effect ofAspergillus fumigatusInfection on Vitamin D Receptor Expression in Cystic Fibrosis

(2012) Catherine A. Coughlan et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Multimorbidity and comorbidity in the Dutch population – data from general practices

(2012) Sandra H van Oostrom et al.   BMC PUBLIC HEALTH

Alveolar Macrophage Cathelicidin Deficiency in Severe Sarcoidosis

(2012) Barbara P. Barna et al.   Journal of Innate Immunity

ENCODE: The human encyclopaedia

(2012) Brendan Maher   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

MicroRNA-21 targets the vitamin D–dependent antimicrobial pathway in leprosy

(2012) Philip T Liu et al.   NATURE MEDICINE

Genomic sequencing of uncultured microorganisms from single cells

(2012) Roger S. Lasken   NATURE REVIEWS MICROBIOLOGY

Comparing the Similarity of Different Groups of Bacteria to the Human Proteome

(2012) Brett Trost et al.   PLoS One

Quantitative Analysis of the Human Airway Microbial Ecology Reveals a Pervasive Signature for Cystic Fibrosis

(2012) P. C. Blainey et al.   Science Translational Medicine

Manipulation of Costimulatory Molecules by Intracellular Pathogens: Veni, Vidi, Vici!!

(2012) Nargis Khan et al.   PLoS Pathogens

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

Human Microbiome in Health and Disease

(2011) Kathryn J. Pflughoeft et al.   Annual Review of Pathology-Mechanisms of Disease

Immunostimulation in the era of the metagenome

(2011) Amy D Proal et al.   Cellular & Molecular Immunology

Prediction of protein–protein interactions between human host and a pathogen and its application to three pathogenic bacteria

(2011) O. Krishnadev et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome

(2011) David T Pride et al.   ISME Journal

Ecology drives a global network of gene exchange connecting the human microbiome

(2011) Chris S. Smillie et al.   NATURE

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

(2011) I. Pagani et al.   NUCLEIC ACIDS RESEARCH

Distinct Cerebrospinal Fluid Proteomes Differentiate Post-Treatment Lyme Disease from Chronic Fatigue Syndrome

(2011) Steven E. Schutzer et al.   PLoS One

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

Longitudinal Study of the Dynamics of Vaginal Microflora during Two Consecutive Menstrual Cycles

(2011) Guido Lopes dos Santos Santiago et al.   PLoS One

MDA5 and TLR3 Initiate Pro-Inflammatory Signaling Pathways Leading to Rhinovirus-Induced Airways Inflammation and Hyperresponsiveness

(2011) Qiong Wang et al.   PLoS Pathogens

Moving pictures of the human microbiome

(2011) J Gregory Caporaso et al.   GENOME BIOLOGY

Toward defining the autoimmune microbiome for type 1 diabetes

(2010) Adriana Giongo et al.   ISME Journal

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults

(2010) Nadja Larsen et al.   PLoS One

Dysregulation of the Vitamin D Nuclear Receptor May Contribute to the Higher Prevalence of Some Autoimmune Diseases in Women

(2009) Amy D. Proal et al.   Annals of the New York Academy of Sciences

Shared familial aggregation of susceptibility to autoimmune diseases

(2009) Kari Hemminki et al.   ARTHRITIS AND RHEUMATISM

Vitamin D: The alternative hypothesis

(2009) Paul J. Albert et al.   AUTOIMMUNITY REVIEWS

Multifunctional host defense peptides: Antimicrobial peptides, the small yet big players in innate and adaptive immunity

(2009) Constance Auvynet et al.   FEBS Journal

Direct and Indirect Induction by 1,25-Dihydroxyvitamin D3of the NOD2/CARD15-Defensin β2 Innate Immune Pathway Defective in Crohn Disease

(2009) Tian-Tian Wang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

BFAST: An Alignment Tool for Large Scale Genome Resequencing

(2009) Nils Homer et al.   PLoS One

Topographical and Temporal Diversity of the Human Skin Microbiome

(2009) E. A. Grice et al.   SCIENCE

Activation of Human Monocytes by Live Borrelia burgdorferi Generates TLR2-Dependent and -Independent Responses Which Include Induction of IFN-β

(2009) Juan C. Salazar et al.   PLoS Pathogens

Acquisition of Helicobacter Pylori Infection in Early Childhood: Independent Contributions of Infected Mothers, Fathers and Siblings

(2008) Maria Weyermann et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Proteolytic Profiles and Angiotensin-I Converting Enzyme and α-Glucosidase Inhibitory Activities of Selected Lactic Acid Bacteria

(2008) L. Ramchandran et al.   JOURNAL OF FOOD SCIENCE

Polymerase chain reaction detection of bacterial 16S rRNA gene in human blood

(2008) Kosei Moriyama et al.   MICROBIOLOGY AND IMMUNOLOGY

Human immunodeficiency virus type 1, human protein interaction database at NCBI

(2008) W. Fu et al.   NUCLEIC ACIDS RESEARCH

Microbial Prevalence, Diversity and Abundance in Amniotic Fluid During Preterm Labor: A Molecular and Culture-Based Investigation

(2008) Daniel B. DiGiulio et al.   PLoS One

Substantial Alterations of the Cutaneous Bacterial Biota in Psoriatic Lesions

(2008) Zhan Gao et al.   PLoS One

Perceiving molecular evolution processes in Escherichia coli by comprehensive metabolite and gene expression profiling

(2008) Chandran Vijayendran et al.   GENOME BIOLOGY