Poplar Genomics: State of the Science

Identification of the flavin-dependent monooxygenase-encoding YUCCA gene family in Populus trichocarpa and their expression in vegetative tissues and in response to hormone and environmental stresses

(2010) Xia Ye et al.   PLANT CELL TISSUE AND ORGAN CULTURE

RepPop: a database for repetitive elements in Populus trichocarpa

(2009) Fengfeng Zhou et al.   BMC GENOMICS

Genome-wide identification of lineage-specific genes in Arabidopsis, Oryza and Populus

(2009) Xiaohan Yang et al.   GENOMICS

The COBRA gene family in Populus and gene expression in vegetative organs and in response to hormones and environmental stresses

(2009) Xia Ye et al.   PLANT GROWTH REGULATION

Regulation and Identity of Florigen: FLOWERING LOCUS T Moves Center Stage

(2008) Franziska Turck et al.   Annual Review of Plant Biology

Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa

(2008) Jing Zhuang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

An efficient method to identify differentially expressed genes in microarray experiments

(2008) Huaizhen Qin et al.   BIOINFORMATICS

Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding

(2008) Steven G Ralph et al.   BMC GENOMICS

Global expression profiling in leaves of free-growing aspen

(2008) Andreas Sjodin et al.   BMC PLANT BIOLOGY

How the walls come crumbling down: recent structural biochemistry of plant polysaccharide degradation

(2008) H GILBERT et al.   CURRENT OPINION IN PLANT BIOLOGY

Expression analysis of the calcineurin B-like gene family in rice (Oryza sativa L.) under environmental stresses

(2008) Zhimin Gu et al.   GENE

Multilocus Patterns of Nucleotide Polymorphism and the Demographic History of Populus tremula

(2008) P. K. Ingvarsson   GENETICS

Nucleotide Polymorphism and Phenotypic Associations Within and Around the phytochrome B2 Locus in European Aspen (Populus tremula, Salicaceae)

(2008) P. K. Ingvarsson et al.   GENETICS

Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

(2008) H. Tang et al.   GENOME RESEARCH

Genome structure and emerging evidence of an incipient sex chromosome in Populus

(2008) T. Yin et al.   GENOME RESEARCH

Kunitz Trypsin Inhibitor: An Antagonist of Cell Death Triggered by Phytopathogens and Fumonisin B1 in Arabidopsis

(2008) Jing Li et al.   Molecular Plant

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

(2008) F. Martin et al.   NATURE

Comparative analysis of the transcriptomes ofPopulus trichocarpaandArabidopsis thalianasuggests extensive evolution of gene expression regulation in angiosperms

(2008) Tania Quesada et al.   NEW PHYTOLOGIST

Comparative analysis of orthologous cellulose synthase promoters fromArabidopsis,PopulusandEucalyptus: evidence of conserved regulatory elements in angiosperms

(2008) Nicole Marie Creux et al.   NEW PHYTOLOGIST

Molecular phylogeny and expression of poplar circadian clock genes, LHY1 and LHY2

(2008) Naoki Takata et al.   NEW PHYTOLOGIST

The FLOWERING LOCUS T/TERMINAL FLOWER 1 Family in Lombardy Poplar

(2008) Tomohiro Igasaki et al.   PLANT AND CELL PHYSIOLOGY

A LysM Receptor-Like Kinase Plays a Critical Role in Chitin Signaling and Fungal Resistance in Arabidopsis

(2008) J. Wan et al.   PLANT CELL

Dissecting the Molecular Basis of the Regulation of Wood Formation by Auxin in Hybrid Aspen

(2008) J. Nilsson et al.   PLANT CELL

Calcineurin B-Like family in Populus: comparative genome analysis and expression pattern under cold, drought and salt stress treatment

(2008) Hechen Zhang et al.   PLANT GROWTH REGULATION

Genome-wide identification of NBS resistance genes in Populus trichocarpa

(2008) Annegret Kohler et al.   PLANT MOLECULAR BIOLOGY

Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice

(2008) Jong-Min Baek et al.   PLANT MOLECULAR BIOLOGY

Comparative Analysis of Divergent and Convergent Gene Pairs and Their Expression Patterns in Rice, Arabidopsis, and Populus

(2008) N. Krom et al.   PLANT PHYSIOLOGY

Genome-Wide Analysis of MIKCC-Type MADS Box Genes in Grapevine

(2008) J. Diaz-Riquelme et al.   PLANT PHYSIOLOGY

Expansion and Diversification of the Populus R2R3-MYB Family of Transcription Factors

(2008) O. Wilkins et al.   PLANT PHYSIOLOGY

The F-Box Gene Family Is Expanded in Herbaceous Annual Plants Relative to Woody Perennial Plants

(2008) X. Yang et al.   PLANT PHYSIOLOGY

Compositional characterization and imaging of “wall-bound” acylesters of Populus trichocarpa reveal differential accumulation of acyl molecules in normal and reactive woods

(2008) Jin-Ying Gou et al.   PLANTA

Extending Genomics to Natural Communities and Ecosystems

(2008) T. G. Whitham et al.   SCIENCE

Synteny and Collinearity in Plant Genomes

(2008) H. Tang et al.   SCIENCE

Physiological characterization and identification of genes differentially expressed in response to drought induced by PEG 6000 in Populus canadensis leaves

(2007) Aurore Caruso et al.   JOURNAL OF PLANT PHYSIOLOGY

Functional Analysis of the Kunitz Trypsin Inhibitor Family in Poplar Reveals Biochemical Diversity and Multiplicity in Defense against Herbivores

(2007) I. T. Major et al.   PLANT PHYSIOLOGY