Integrating prokaryotes and eukaryotes: DNA transposases in light of structure

pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination

(2009) Anna Lobley et al.   BIOINFORMATICS

Molecular Architecture of the Mos1 Paired-End Complex: The Structural Basis of DNA Transposition in a Eukaryote

(2009) Julia M. Richardson et al.   CELL

A Guide to Template Based Structure Prediction

(2009) Xiaotao Qu et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Structural basis for HIV-1 DNA integration in the human genome, role of the LEDGF/P75 cofactor

(2009) Fabrice Michel et al.   EMBO JOURNAL

Retroviral integrase superfamily: the structural perspective

(2009) Marcin Nowotny   EMBO REPORTS

Piecing together the structure of retroviral integrase, an important target in AIDS therapy

(2009) Mariusz Jaskolski et al.   FEBS Journal

Site-Specific Insertion of IS492 in Pseudoalteromonas atlantica

(2009) B. P. Higgins et al.   JOURNAL OF BACTERIOLOGY

New Superfamilies of Eukaryotic DNA Transposons and Their Internal Divisions

(2009) W. Bao et al.   MOLECULAR BIOLOGY AND EVOLUTION

Initial Stages of V(D)J Recombination: The Organization of RAG1/2 and RSS DNA in the Postcleavage Complex

(2009) Gabrielle J. Grundy et al.   MOLECULAR CELL

piggyBac transposition reprograms fibroblasts to induced pluripotent stem cells

(2009) Knut Woltjen et al.   NATURE

A transposon-based chromosomal engineering method to survey a large cis-regulatory landscape in mice

(2009) Chikara Kokubu et al.   NATURE GENETICS

Transposon-mediated genome manipulation in vertebrates

(2009) Zoltán Ivics et al.   NATURE METHODS

Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis

(2009) Fang Fang Yin et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Base Flipping in Tn10 Transposition: An Active Flip and Capture Mechanism

(2009) Julien Bischerour et al.   PLoS One

CASP8 results in context of previous experiments

(2009) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The new IS1595 family, its relation to IS1 and the frontier between insertion sequences and transposons

(2009) Patricia Siguier et al.   RESEARCH IN MICROBIOLOGY

Structural Basis for Functional Tetramerization of Lentiviral Integrase

(2009) Stephen Hare et al.   PLoS Pathogens

Transposon Tn5

(2008) William S. Reznikoff   Annual Review of Genetics

Molluscan mobile elements similar to the vertebrate Recombination-Activating Genes

(2008) Yuri Panchin et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Mechanism of IS200/IS605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection

(2008) Orsolya Barabas et al.   CELL

piggyBac can bypass DNA synthesis during cut and paste transposition

(2008) Rupak Mitra et al.   EMBO JOURNAL

Analysis of the DDE Motif in the Mutator Superfamily

(2008) Aurélie Hua-Van et al.   JOURNAL OF MOLECULAR EVOLUTION

In Vitro Reconstitution of a Single-Stranded Transposition Mechanism of IS608

(2008) Catherine Guynet et al.   MOLECULAR CELL

The Jpred 3 secondary structure prediction server

(2008) C. Cole et al.   NUCLEIC ACIDS RESEARCH

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Tn7 elements: Engendering diversity from chromosomes to episomes

(2008) Adam R. Parks et al.   PLASMID

Transposition of a reconstructed Harbinger element in human cells and functional homology with two transposon-derived cellular genes

(2008) L. Sinzelle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular characterization of the first intact Transib transposon from Helicoverpa zea

(2007) Song Chen et al.   GENE