Runs of homozygosity have utility in mammalian conservation and evolutionary studies

Inferring Individual Inbreeding and Demographic History from Segments of Identity by Descent in Ficedula Flycatcher Genome Sequences

(2017) Marty Kardos et al.   GENETICS

Call for a Paradigm Shift in the Genetic Management of Fragmented Populations

(2017) Katherine Ralls et al.   Conservation Letters

Inferring Individual Inbreeding and Demographic History from Segments of Identity by Descent in Ficedula Flycatcher Genome Sequences

(2017) Marty Kardos et al.   GENETICS

Large numbers of vertebrates began rapid population decline in the late 19th century

(2016) Haipeng Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Anthropocene map of genetic diversity

(2016) A. Miraldo et al.   SCIENCE

The reduction of genetic diversity in threatened vertebrates and new recommendations regarding IUCN conservation rankings

(2015) Janna R. Willoughby et al.   BIOLOGICAL CONSERVATION

Worldwide patterns of genomic variation and admixture in gray wolves

(2015) Zhenxin Fan et al.   GENOME RESEARCH

Measuring individual inbreeding in the age of genomics: marker-based measures are better than pedigrees

(2015) M Kardos et al.   HEREDITY

Mammalian genetic diversity as a function of habitat, body size, trophic class, and conservation status

(2015) Jacqueline M. Doyle et al.   JOURNAL OF MAMMALOGY

Natural Selection Constrains Neutral Diversity across A Wide Range of Species

(2015) Russell B. Corbett-Detig et al.   PLOS BIOLOGY

Accelerated modern human-induced species losses: Entering the sixth mass extinction

(2015) G. Ceballos et al.   Science Advances

Variant detection sensitivity and biases in whole genome and exome sequencing

(2014) Alison M Meynert et al.   BMC BIOINFORMATICS

Drawing ecological inferences from coincident patterns of population- and community-level biodiversity

(2014) Mark Vellend et al.   MOLECULAR ECOLOGY

Comparative population genomics in animals uncovers the determinants of genetic diversity

(2014) J. Romiguier et al.   NATURE

Climate envelope models suggest spatio-temporal co-occurrence of refugia of African birds and mammals

(2013) Irina Levinsky et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Molecular evolution and the latitudinal biodiversity gradient

(2013) E J Dowle et al.   HEREDITY

Genome sequencing and population genomics in non-model organisms

(2013) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Genetic diversity within vertebrate species is greater at lower latitudes

(2012) Rachel I. Adams et al.   EVOLUTIONARY ECOLOGY

Microsatellites as Targets of Natural Selection

(2012) R. J. Haasl et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring recent historic abundance from current genetic diversity

(2012) Per J. Palsbøll et al.   MOLECULAR ECOLOGY

Reliability of genetic bottleneck tests for detecting recent population declines

(2012) M. ZACHARIAH PEERY et al.   MOLECULAR ECOLOGY

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data

(2012) Rasmus Nielsen et al.   PLoS One

Poleward bound: biological impacts of Southern Hemisphere glaciation

(2012) Ceridwen I. Fraser et al.   TRENDS IN ECOLOGY & EVOLUTION

Regions of Homozygosity in the Porcine Genome: Consequence of Demography and the Recombination Landscape

(2012) Mirte Bosse et al.   PLoS Genetics

Detecting autozygosity through runs of homozygosity: A comparison of three autozygosity detection algorithms

(2011) Daniel P Howrigan et al.   BMC GENOMICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

The genome as a life-history character: why rate of molecular evolution varies between mammal species

(2011) L. Bromham   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Global habitat suitability models of terrestrial mammals

(2011) C. Rondinini et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Are rates of molecular evolution in mammals substantially accelerated in warmer environments?

(2011) J. T. Weir et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genomic Runs of Homozygosity Record Population History and Consanguinity

(2010) Mirna Kirin et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Runs of Homozygosity in European Populations

(2008) Ruth McQuillan et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

Phylogeographic insights into cryptic glacial refugia

(2008) J PROVAN et al.   TRENDS IN ECOLOGY & EVOLUTION