Variant discovery in a QTL region on chromosome 3 associated with fatness in chickens

Chicken lines divergent for low or high abdominal fat deposition: a relevant model to study the regulation of energy metabolism

(2013) E. Baéza et al.   Animal

Retracted: Advances in the physiological and pathological implications of cholesterol

(2013) Victor A. Cortes et al.   BIOLOGICAL REVIEWS

Transcriptional analysis of abdominal fat in genetically fat and lean chickens reveals adipokines, lipogenic genes and a link between hemostasis and leanness

(2013) Christopher W Resnyk et al.   BMC GENOMICS

Development of a high density 600K SNP genotyping array for chicken

(2013) Andreas Kranis et al.   BMC GENOMICS

Expression analysis of thrombospondin 2 in prostate cancer and benign prostatic hyperplasia

(2013) A.R. Matos et al.   EXPERIMENTAL AND MOLECULAR PATHOLOGY

Relationship between 5′ UTR length and gene expression pattern in chicken

(2013) You S. Rao et al.   GENETICA

Daily rhythms of glycerophospholipid synthesis in fibroblast cultures involve differential enzyme contributions

(2013) Victoria A. Acosta-Rodríguez et al.   JOURNAL OF LIPID RESEARCH

Tysnd1 Deficiency in Mice Interferes with the Peroxisomal Localization of PTS2 Enzymes, Causing Lipid Metabolic Abnormalities and Male Infertility

(2013) Yumi Mizuno et al.   PLoS Genetics

Identification of candidate genes and mutations in QTL regions for chicken growth using bioinformatic analysis of NGS and SNP-chip data

(2013) Muhammad Ahsan et al.   Frontiers in Genetics

Analysis of insertion-deletion from deep-sequencing data: software evaluation for optimal detection

(2012) J. A. Neuman et al.   BRIEFINGS IN BIOINFORMATICS

Identification and expression analysis of GPAT family genes during early development of Xenopus laevis

(2012) Gabriel E. Bertolesi et al.   GENE EXPRESSION PATTERNS

Quantitative trait loci associated with body weight and abdominal fat traits on chicken chromosomes 3, 5 and 7

(2012) S.Z. Wang et al.   GENETICS AND MOLECULAR RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Geranylgeranyl pyrophosphate stimulates PPARγ expression and adipogenesis through the inhibition of osteoblast differentiation

(2011) Megan M. Weivoda et al.   BONE

MLK4 has negative effect on TLR4 signaling

(2011) Alim Seit-Nebi et al.   Cellular & Molecular Immunology

Associations between newly discovered polymorphisms in the Bos taurusgrowth hormone receptor gene and performance traits in Holstein-Friesian dairy cattle

(2010) S. M. Waters et al.   ANIMAL GENETICS

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

(2010) William McLaren et al.   BIOINFORMATICS

Thrombospondin-2 is an endogenous adipocyte inhibitor

(2010) Hailu S. Shitaye et al.   MATRIX BIOLOGY

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Quantitative trait loci associated with fatness in a broiler-layer cross

(2009) R. L. R. Campos et al.   ANIMAL GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Role of 5′- and 3′-untranslated regions of mRNAs in human diseases

(2009) Sangeeta Chatterjee et al.   BIOLOGY OF THE CELL

Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome

(2009) Andreia J Amaral et al.   BMC GENOMICS

High-throughput genotyping by whole-genome resequencing

(2009) X. Huang et al.   GENOME RESEARCH

Defects in myelination, paranode organization and Purkinje cell innervation in the ether lipid-deficient mouse cerebellum

(2009) Andre Teigler et al.   HUMAN MOLECULAR GENETICS

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

(2009) Prateek Kumar et al.   Nature Protocols

QTL for several metabolic traits map to loci controlling growth and body composition in an F2 intercross between high- and low-growth chicken lines

(2009) Javad Nadaf et al.   PHYSIOLOGICAL GENOMICS

Genotypic characterization of microsatellite markers in broiler and layer selected chicken lines and their reciprocal F1s

(2009) Millor Fernandes do Rosário et al.   SCIENTIA AGRICOLA

Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery

(2009) Sebastian H Eck et al.   GENOME BIOLOGY

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH