Design of a low-density SNP chip for the main Australian sheep breeds and its effect on imputation and genomic prediction accuracy

Genetic variation within and between subpopulations of the Australian Merino breed

(2016) Andrew A. Swan et al.   Animal Production Science

A new approach for efficient genotype imputation using information from relatives

(2014) Mehdi Sargolzaei et al.   BMC GENOMICS

Short communication: Imputing genotypes using PedImpute fast algorithm combining pedigree and population information

(2013) E.L. Nicolazzi et al.   JOURNAL OF DAIRY SCIENCE

Inferring Demography from Runs of Homozygosity in Whole-Genome Sequence, with Correction for Sequence Errors

(2013) Iona M. MacLeod et al.   MOLECULAR BIOLOGY AND EVOLUTION

Accuracy of genomic prediction using an evenly spaced, low-density single nucleotide polymorphism panel in broiler chickens

(2013) C. Wang et al.   POULTRY SCIENCE

Factors Affecting the Accuracy of Genotype Imputation in Populations from Several Maize Breeding Programs

(2012) John M. Hickey et al.   CROP SCIENCE

Imputation of genotypes with low-density chips and its effect on reliability of direct genomic values in Dutch Holstein cattle

(2012) H.A. Mulder et al.   JOURNAL OF DAIRY SCIENCE

Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels

(2012) M. Erbe et al.   JOURNAL OF DAIRY SCIENCE

Design of a Bovine Low-Density SNP Array Optimized for Imputation

(2012) Didier Boichard et al.   PLoS One

Design and role of an information nucleus in sheep breeding programs

(2012) J. H. J. van der Werf et al.   Animal Production Science

Preliminary estimates of genetic parameters for carcass and meat quality traits in Australian sheep

(2012) S. I. Mortimer et al.   Animal Production Science

Design and phenotyping procedures for recording wool, skin, parasite resistance, growth, carcass yield and quality traits of the SheepGENOMICS mapping flock

(2012) Jason D. White et al.   Animal Production Science

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

(2012) James W. Kijas et al.   PLOS BIOLOGY

A Fast, Powerful Method for Detecting Identity by Descent

(2011) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A single nucleotide polymorphism on chromosome 10 is highly predictive for the polled phenotype in Australian Merino sheep

(2011) S. Dominik et al.   ANIMAL GENETICS

Accuracy of genotype imputation in sheep breeds

(2011) B. J. Hayes et al.   ANIMAL GENETICS

Imputation of Missing Genotypes From Sparse to High Density Using Long-Range Phasing

(2011) Hans D. Daetwyler et al.   GENETICS

The Use of Family Relationships and Linkage Disequilibrium to Impute Phase and Missing Genotypes in Up to Whole-Genome Sequence Density Genotypic Data

(2010) T. Meuwissen et al.   GENETICS

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals

(2009) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

(2009) Bryan N. Howie et al.   PLoS Genetics

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE