TargetFreeze: Identifying Antifreeze Proteins via a Combination of Weights using Sequence Evolutionary Information and Pseudo Amino Acid Composition

Discrimination of acidic and alkaline enzyme using Chou’s pseudo amino acid composition in conjunction with probabilistic neural network model

(2015) Zaheer Ullah Khan et al.   JOURNAL OF THEORETICAL BIOLOGY

Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou׳s general PseAAC

(2015) Abdollah Dehzangi et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of protein subcellular localization by incorporating multiobjective PSO-based feature subset selection into the general form of Chou’s PseAAC

(2015) Monalisa Mandal et al.   MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING

Identification of Real MicroRNA Precursors with a Pseudo Structure Status Composition Approach

(2015) Bin Liu et al.   PLoS One

iTIS-PseTNC: A sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition

(2014) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

(2014) Shou-Hui Guo et al.   BIOINFORMATICS

A Multi-label Classifier for Prediction Membrane Protein Functional Types in Animal

(2014) Hong-Liang Zou   JOURNAL OF MEMBRANE BIOLOGY

Chou׳s pseudo amino acid composition improves sequence-based antifreeze protein prediction

(2014) Sukanta Mondal et al.   JOURNAL OF THEORETICAL BIOLOGY

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition

(2014) Bin Liu et al.   PLoS One

iNitro-Tyr: Prediction of Nitrotyrosine Sites in Proteins with General Pseudo Amino Acid Composition

(2014) Yan Xu et al.   PLoS One

Learning protein multi-view features in complex space

(2013) Dong-Jun Yu et al.   AMINO ACIDS

iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types

(2013) Xuan Xiao et al.   ANALYTICAL BIOCHEMISTRY

A Multilabel Model Based on Chou’s Pseudo–Amino Acid Composition for Identifying Membrane Proteins with Both Single and Multiple Functional Types

(2013) Chao Huang et al.   JOURNAL OF MEMBRANE BIOLOGY

iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins

(2013) Wei-Zhong Lin et al.   Molecular BioSystems

Some remarks on predicting multi-label attributes in molecular biosystems

(2013) Kuo-Chen Chou   Molecular BioSystems

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteineS-nitrosylation sites in proteins

(2013) Yan Xu et al.   PeerJ

Enhancing Membrane Protein Subcellular Localization Prediction by Parallel Fusion of Multi-View Features

(2012) Dongjun Yu et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Using Support Vector Machine and Evolutionary Profiles to Predict Antifreeze Protein Sequences

(2012) Xiaowei Zhao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

RFCRYS: Sequence-based protein crystallization propensity prediction by means of random forest

(2012) Samad Jahandideh et al.   JOURNAL OF THEORETICAL BIOLOGY

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Accurate prediction of protein structural class using auto covariance transformation of PSI-BLAST profiles

(2011) Taigang Liu et al.   AMINO ACIDS

Identification of Antifreeze Proteins and Their Functional Residues by Support Vector Machine and Genetic Algorithms based on n-Peptide Compositions

(2011) Chin-Sheng Yu et al.   PLoS One

AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties

(2010) Krishna Kumar Kandaswamy et al.   JOURNAL OF THEORETICAL BIOLOGY

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

Predicting protein subnuclear localization using GO-amino-acid composition features

(2009) Wen-Lin Huang et al.   BIOSYSTEMS

Simultaneous freeze tolerance and avoidance in individual fungus gnats, Exechia nugatoria

(2009) Todd Sformo et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Exploiting Amino Acid Composition for Predicting Protein-Protein Interactions

(2009) Sushmita Roy et al.   PLoS One

Lateral Transfer of a Lectin-Like Antifreeze Protein Gene in Fishes

(2008) Laurie A. Graham et al.   PLoS One

PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition

(2007) Hong-Bin Shen et al.   ANALYTICAL BIOCHEMISTRY