Validating the use of trap-collected feces for studying the gut microbiota of a small mammal (Neotoma lepida)

Gut microbes of mammalian herbivores facilitate intake of plant toxins

(2014) Kevin D. Kohl et al.   ECOLOGY LETTERS

Captivity results in disparate loss of gut microbial diversity in closely related hosts

(2014) K. D. Kohl et al.   Conservation Physiology

Convergence of gut microbiomes in myrmecophagous mammals

(2013) Frédéric Delsuc et al.   MOLECULAR ECOLOGY

Wild-caught rodents retain a majority of their natural gut microbiota upon entrance into captivity

(2013) Kevin D. Kohl et al.   Environmental Microbiology Reports

Conservation and the Microbiome

(2012) Kent H. Redford et al.   CONSERVATION BIOLOGY

Experience matters: prior exposure to plant toxins enhances diversity of gut microbes in herbivores

(2012) Kevin D. Kohl et al.   ECOLOGY LETTERS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Guidelines of the American Society of Mammalogists for the use of wild mammals in research

(2011) Robert S. Sikes et al.   JOURNAL OF MAMMALOGY

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Updated guidelines for protection of mammalogists and wildlife researchers from hantavirus pulmonary syndrome (HPS)

(2010) Douglas A. Kelt et al.   JOURNAL OF MAMMALOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE