Peptide-Based Vaccinology: Experimental and Computational Approaches to Target Hypervariable Viruses through the Fine Characterization of Protective Epitopes Recognized by Monoclonal Antibodies and the Identification of T-Cell-Activating Peptides

Epitope-distal Effects Accompany the Binding of Two Distinct Antibodies to Hepatitis B Virus Capsids

(2013) Jessica Z. Bereszczak et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Novel Biopanning Strategy To Identify Epitopes Associated with Vaccine Protection

(2013) B. C. Bachler et al.   JOURNAL OF VIROLOGY

Identification of rabies virus mimotopes screened from a phage display peptide library with purified dog anti-rabies virus serum IgG

(2013) Limin Yang et al.   VIRUS RESEARCH

Mimotopes selected by biopanning with high-titer HIV-neutralizing antibodies in plasma from Chinese slow progressors

(2012) Xiaoli Zhang et al.   Brazilian Journal of Infectious Diseases

Characterization of epitopes recognized by monoclonal antibodies: experimental approaches supported by freely accessible bioinformatic tools

(2012) Nicola Clementi et al.   DRUG DISCOVERY TODAY

Rapid Conformational Epitope Mapping of Anti-gp120 Antibodies with a Designed Mutant Panel Displayed on Yeast

(2012) Jordi Mata-Fink et al.   JOURNAL OF MOLECULAR BIOLOGY

Clusters versus Affinity-Based Approaches in F. tularensis Whole Genome Search of CTL Epitopes

(2012) Anat Zvi et al.   PLoS One

Fine level epitope mapping and conservation analysis of two novel linear B-cell epitopes of the avian infectious bronchitis coronavirus nucleocapsid protein

(2012) Zongxi Han et al.   VIRUS RESEARCH

A potential role for monoclonal antibodies in prophylactic and therapeutic treatment of influenza

(2011) Nicasio Mancini et al.   ANTIVIRAL RESEARCH

MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries

(2011) Wen Chen et al.   BMC BIOINFORMATICS

Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature

(2011) Wen Zhang et al.   BMC BIOINFORMATICS

Identification of a human immunodominant T-cell epitope of mycobacterium tuberculosis antigen PPE44

(2011) Barbara Cuccu et al.   BMC MICROBIOLOGY

Identification of novel T cell epitopes from efflux pumps of Mycobacterium tuberculosis

(2011) Yu-huang Zhu et al.   IMMUNOLOGY LETTERS

A cross-protective mAb recognizes a novel epitope within the flavivirus NS1 protein

(2011) T. H. Lee et al.   JOURNAL OF GENERAL VIROLOGY

Immunological mechanisms of vaccination

(2011) Bali Pulendran et al.   NATURE IMMUNOLOGY

A Human Monoclonal Antibody with Neutralizing Activity against Highly Divergent Influenza Subtypes

(2011) Nicola Clementi et al.   PLoS One

A Neutralizing Antibody Selected from Plasma Cells That Binds to Group 1 and Group 2 Influenza A Hemagglutinins

(2011) D. Corti et al.   SCIENCE

Pathogen-associated molecular patterns on biomaterials: a paradigm for engineering new vaccines

(2011) Stacey L. Demento et al.   TRENDS IN BIOTECHNOLOGY

In Silico Analysis of Six Known Leishmania major Antigens and In Vitro Evaluation of Specific Epitopes Eliciting HLA-A2 Restricted CD8 T Cell Response

(2011) Negar Seyed et al.   PLoS Neglected Tropical Diseases

EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results

(2010) Shide Liang et al.   BMC BIOINFORMATICS

Influenza Hemagglutinin and Neuraminidase Membrane Glycoproteins

(2010) Steven J. Gamblin et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

High Throughput T Epitope Mapping and Vaccine Development

(2010) Giuseppina Li Pira et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Applications for T-cell epitope queries and tools in the Immune Epitope Database and Analysis Resource

(2010) Yohan Kim et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Interdisciplinary Analysis of HIV-Specific CD8+ T Cell Responses against Variant Epitopes Reveals Restricted TCR Promiscuity

(2010) I. Hoof et al.   JOURNAL OF IMMUNOLOGY

Characterization of a discontinuous epitope of the HIV envelope protein gp120 recognized by a human monoclonal antibody using chemical modification and mass spectrometric analysis

(2010) Christine Hager-Braun et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

A reductionist cell-free major histocompatibility complex class II antigen processing system identifies immunodominant epitopes

(2010) Isamu Z Hartman et al.   NATURE MEDICINE

The IMGT/HLA database

(2010) J. Robinson et al.   NUCLEIC ACIDS RESEARCH

HLA Class I Binding 9mer Peptides from Influenza A Virus Induce CD4+ T Cell Responses

(2010) Mingjun Wang et al.   PLoS One

Monoclonal antibodies isolated from human B cells neutralize a broad range of H1 subtype influenza A viruses including swine-origin Influenza virus (S-OIV)

(2010) Roberto Burioni et al.   VIROLOGY

Epitopia: a web-server for predicting B-cell epitopes

(2009) Nimrod D Rubinstein et al.   BMC BIOINFORMATICS

Prediction of antigenic epitopes on protein surfaces by consensus scoring

(2009) Shide Liang et al.   BMC BIOINFORMATICS

Vaccines: the Fourth Century

(2009) S. A. Plotkin   Clinical and Vaccine Immunology

Identification and structural definition of H5-specific CTL epitopes restricted by HLA-A*0201 derived from the H5N1 subtype of influenza A viruses

(2009) Y. Sun et al.   JOURNAL OF GENERAL VIROLOGY

SEPPA: a computational server for spatial epitope prediction of protein antigens

(2009) Jing Sun et al.   NUCLEIC ACIDS RESEARCH

The Immune Epitope Database 2.0

(2009) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure

(2008) Michael J. Sweredoski et al.   BIOINFORMATICS

Tandem duplication, circular permutation, molecular adaptation: how Solanaceae resist pests via inhibitors

(2008) Lesheng Kong et al.   BMC BIOINFORMATICS

ElliPro: a new structure-based tool for the prediction of antibody epitopes

(2008) Julia Ponomarenko et al.   BMC BIOINFORMATICS

Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research

(2008) Hong Lin et al.   BMC IMMUNOLOGY

Tracking antigen-driven responses by flow cytometry: Monitoring proliferation by dye dilution

(2008) Paul K. Wallace et al.   CYTOMETRY PART A

Perspectives for the utilization of neutralizing human monoclonal antibodies as anti-HCV drugs

(2008) Roberto Burioni et al.   JOURNAL OF HEPATOLOGY

Predicting linear B‐cell epitopes using string kernels

(2008) Yasser EL‐Manzalawy et al.   JOURNAL OF MOLECULAR RECOGNITION

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11

(2008) Claus Lundegaard et al.   NUCLEIC ACIDS RESEARCH

COBEpro: a novel system for predicting continuous B-cell epitopes

(2008) Michael J. Sweredoski et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Benchmarking B cell epitope prediction: Underperformance of existing methods

(2004) Martin J. Blythe et al.   PROTEIN SCIENCE