Oblong, a program to analyse phylogenomic data sets with millions of characters, requiring negligible amounts of RAM

RAxML-Light: a tool for computing terabyte phylogenies

(2012) A. Stamatakis et al.   BIOINFORMATICS

MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis

(2012) S. Kumar et al.   BIOINFORMATICS

Faster exact maximum parsimony search with XMP

(2011) W. Timothy J. White et al.   BIOINFORMATICS

Distinctions between optimal and expected support

(2010) Ward C. Wheeler   CLADISTICS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Phylogenetic analysis of 73 060 taxa corroborates major eukaryotic groups

(2009) Pablo A. Goloboff et al.   CLADISTICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Is REP a measure of “objective support”?

(2008) James S. Farris et al.   CLADISTICS

TNT, a free program for phylogenetic analysis

(2008) Pablo A. Goloboff et al.   CLADISTICS

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY