Bridging the Two Worlds: A Universal Interface between Enzymatic and DNA Computing Systems

Divide and control: split design of multi-input DNA logic gates

(2015) Yulia V. Gerasimova et al.   CHEMICAL COMMUNICATIONS

Exercises in Molecular Computing

(2014) Milan N. Stojanovic et al.   ACCOUNTS OF CHEMICAL RESEARCH

Activation of a Biocatalytic Electrode by Removing Glucose Oxidase from the Surface—Application to Signal Triggered Drug Release

(2014) Maria Gamella et al.   ACS Applied Materials & Interfaces

Model system for targeted drug release triggered by immune-specific signals

(2014) Shay Mailloux et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Molecular Logic Gates on DNA Origami Nanostructures for MicroRNA Diagnostics

(2014) Dongfang Wang et al.   ANALYTICAL CHEMISTRY

Signal Propagation in Multi-Layer DNAzyme Cascades Using Structured Chimeric Substrates

(2014) Carl W. Brown et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Visual Displays that Directly Interface and Provide Read-Outs of Molecular States via Molecular Graphics Processing Units

(2014) Julia E. Poje et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Catalytic Molecular Logic Devices by DNAzyme Displacement

(2014) Carl W. Brown et al.   CHEMBIOCHEM

Kinetic Model for a Threshold Filter in an Enzymatic System for Bioanalytical and Biocomputing Applications

(2014) Vladimir Privman et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Majority and Minority Gates Realized in Enzyme-Biocatalyzed Systems Integrated with Logic Networks and Interfaced with Bioelectronic Systems

(2014) Shay Mailloux et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A computational paradigm for dynamic logic-gates in neuronal activity

(2014) Amir Goldental   Frontiers in Computational Neuroscience

A model system for targeted drug release triggered by biomolecular signals logically processed through enzyme logic networks

(2013) Shay Mailloux et al.   ANALYST

Folding of 16S rRNA in a Signal-Producing Structure for the Detection of Bacteria

(2013) Yulia V. Gerasimova et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Deoxyribozyme Cascade for Visual Detection of Bacterial RNA

(2013) Yulia V. Gerasimova et al.   CHEMBIOCHEM

Biomolecular release triggered by glucose input – bioelectronic coupling of sensing and actuating systems

(2013) Shay Mailloux et al.   CHEMICAL COMMUNICATIONS

Enzymatic AND Logic Gate with Sigmoid Response Induced by Photochemically Controlled Oxidation of the Output

(2013) Vladimir Privman et al.   JOURNAL OF PHYSICAL CHEMISTRY B

DNA Computation in Mammalian Cells: MicroRNA Logic Operations

(2013) James Hemphill et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Scaling down DNA circuits with competitive neural networks

(2013) A. J. Genot et al.   Journal of the Royal Society Interface

Enzymatic filter for improved separation of output signals in enzyme logic systems towards ‘sense and treat’ medicine

(2013) Shay Mailloux et al.   Biomaterials Science

Analysis of biomarkers characteristic of porcine liver injury—from biomolecular logic gates to an animal model

(2012) Lenka Halámková et al.   ANALYST

Multianalyte Digital Enzyme Biosensors with Built-in Boolean Logic

(2012) Evgeny Katz et al.   ANALYTICAL CHEMISTRY

Molecular Logic Gates for DNA Analysis: Detection of Rifampin Resistance in M. tuberculosis DNA

(2012) Evan M. Cornett et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A DNA Network as an Information Processing System

(2012) Cristina Costa Santini et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A biochemical logic approach to biomarker-activated drug release

(2012) Vera Bocharova et al.   JOURNAL OF MATERIALS CHEMISTRY

A Logical Molecular Circuit for Programmable and Autonomous Regulation of Protein Activity Using DNA Aptamer–Protein Interactions

(2012) Da Han et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Biomolecular computing systems: principles, progress and potential

(2012) Yaakov Benenson   NATURE REVIEWS GENETICS

Electrochemically Controlled Drug-Mimicking Protein Release from Iron-Alginate Thin-Films Associated with an Electrode

(2011) Zhiyuan Jin et al.   ACS Applied Materials & Interfaces

Control of Noise in Chemical and Biochemical Information Processing

(2011) Vladimir Privman   ISRAEL JOURNAL OF CHEMISTRY

Some Experiments and Directions in Molecular Computing and Robotics

(2011) Milan N. Stojanovic   ISRAEL JOURNAL OF CHEMISTRY

Digital Biosensors with Built-in Logic for Biomedical Applications

(2011) Joseph Wang et al.   ISRAEL JOURNAL OF CHEMISTRY

Chemistry at a Higher Level of Abstraction

(2011) Milan N. Stojanovic et al.   Journal of Computational and Theoretical Nanoscience

Realization and Properties of Biochemical-Computing Biocatalytic XOR Gate Based on Enzyme Inhibition by a Substrate

(2011) Jan Halámek et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Detection of Multiple Disease Indicators by an Autonomous Biomolecular Computer

(2011) Binyamin Gil et al.   NANO LETTERS

Neural network computation with DNA strand displacement cascades

(2011) Lulu Qian et al.   NATURE

RNA-Cleaving Deoxyribozyme Sensor for Nucleic Acid Analysis: The Limit of Detection

(2010) Yulia V. Gerasimova et al.   CHEMBIOCHEM

Enzyme-based logic systems for information processing

(2010) Evgeny Katz et al.   CHEMICAL SOCIETY REVIEWS

Nucleic Acid Detection using MNAzymes

(2010) Yulia V. Gerasimova et al.   CHEMISTRY & BIOLOGY

Multi-enzyme logic network architectures for assessing injuries: digital processing of biomarkers

(2010) Jan Halámek et al.   Molecular BioSystems

Learning through play

(2010) Vladimir Privman   Nature Nanotechnology

Light-driven nanoscale plasmonic motors

(2010) Ming Liu et al.   Nature Nanotechnology

Smart molecules at work—mimicking advanced logic operations

(2009) Joakim Andréasson et al.   CHEMICAL SOCIETY REVIEWS

Biologically Inspired Synthetic Enzymes Made from DNA

(2009) Kenny Schlosser et al.   CHEMISTRY & BIOLOGY

Network Analysis of Biochemical Logic for Noise Reduction and Stability: A System of Three Coupled Enzymatic AND Gates

(2009) Vladimir Privman et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Intelligent Medical Diagnostics via Molecular Logic

(2009) Tania Konry et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

MNAzymes, a Versatile New Class of Nucleic Acid Enzymes That Can Function as Biosensors and Molecular Switches

(2009) Elisa Mokany et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Biocomputers: from test tubes to live cells

(2009) Yaakov Benenson   Molecular BioSystems

Digital Information Processing in Molecular Systems

(2008) Konrad Szaciłowski   CHEMICAL REVIEWS

MicroRNA: an Emerging Therapeutic Target and Intervention Tool

(2008) Zhen Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Optimization of Enzymatic Biochemical Logic for Noise Reduction and Scalability: How Many Biocomputing Gates Can Be Interconnected in a Circuit?

(2008) Vladimir Privman et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Towards molecular computers that operate in a biological environment

(2008) Maya Kahan et al.   PHYSICA D-NONLINEAR PHENOMENA