Improved Temporal Resolution and Linked Hidden Markov Modeling for Switchable Single-Molecule FRET

Defining the Limits of Single-Molecule FRET Resolution in TIRF Microscopy

(2010) Seamus J. Holden et al.   BIOPHYSICAL JOURNAL

The effect of photoswitching kinetics and labeling densities on super-resolution fluorescence imaging

(2010) Sebastian van de Linde et al.   JOURNAL OF BIOTECHNOLOGY

A Comparative Study of Multivariate and Univariate Hidden Markov Modelings in Time-Binned Single-Molecule FRET Data Analysis

(2010) Yang Liu et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Real-time tRNA transit on single translating ribosomes at codon resolution

(2010) Sotaro Uemura et al.   NATURE

Multiple native states reveal persistent ruggedness of an RNA folding landscape

(2010) Sergey V. Solomatin et al.   NATURE

Messy biology and the origins of evolutionary innovations

(2010) Dan S Tawfik   Nature Chemical Biology

Monitoring multiple distances within a single molecule using switchable FRET

(2010) Stephan Uphoff et al.   NATURE METHODS

Single-Molecule Three-Color FRET with Both Negligible Spectral Overlap and Long Observation Time

(2010) Sanghwa Lee et al.   PLoS One

Super-Resolution Imaging with Small Organic Fluorophores

(2009) Mike Heilemann et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Learning Rates and States from Biophysical Time Series: A Bayesian Approach to Model Selection and Single-Molecule FRET Data

(2009) Jonathan E. Bronson et al.   BIOPHYSICAL JOURNAL

Hidden Markov Analysis of Short Single Molecule Intensity Trajectories

(2009) Soonkyo Jung et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Extracting Kinetics Information from Single-Molecule Fluorescence Resonance Energy Transfer Data Using Hidden Markov Models

(2009) Tae-Hee Lee   JOURNAL OF PHYSICAL CHEMISTRY B

On the Mechanism of Trolox as Antiblinking and Antibleaching Reagent

(2009) Thorben Cordes et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Photoswitching Mechanism of Cyanine Dyes

(2009) Graham T. Dempsey et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

SSB protein diffusion on single-stranded DNA stimulates RecA filament formation

(2009) Rahul Roy et al.   NATURE

Conformational transitions in DNA polymerase I revealed by single-molecule FRET

(2009) Y. Santoso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories

(2009) H. S. Chung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Controlling the fluorescence of ordinary oxazine dyes for single-molecule switching and superresolution microscopy

(2009) J. Vogelsang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biology, one molecule at a time

(2009) Achillefs N. Kapanidis et al.   TRENDS IN BIOCHEMICAL SCIENCES

A Reducing and Oxidizing System Minimizes Photobleaching and Blinking of Fluorescent Dyes

(2008) Jan Vogelsang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Subdiffraction-Resolution Fluorescence Imaging with Conventional Fluorescent Probes

(2008) Mike Heilemann et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A nano-positioning system for macromolecular structural analysis

(2008) Adam Muschielok et al.   NATURE METHODS

Single-molecule FRET measures bends and kinks in DNA

(2008) A. K. Wozniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Slide into Action: Dynamic Shuttling of HIV Reverse Transcriptase on Nucleic Acid Substrates

(2008) S. Liu et al.   SCIENCE