Reversed Assembly of Dyes in an RNA Duplex Compared with Those in DNA

Improvement of RNAi Activity and Strand Selectivity of RISC Formation by Modified siRNA Involving Intercalators near 5′ Termini

(2011) Hiroshi Ito et al.   CHEMBIOCHEM

A Cationic Dye Triplet as a Unique “Glue” That Can Connect Fully Matched Termini of DNA Duplexes

(2011) Hiromu Kashida et al.   CHEMISTRY-A EUROPEAN JOURNAL

Coherent Quenching of a Fluorophore for the Design of a Highly Sensitive In-Stem Molecular Beacon

(2010) Yuichi Hara et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Effect of theorthoModification of Azobenzene on the Photoregulatory Efficiency of DNA Hybridization and the Thermal Stability of itscisForm

(2010) Hidenori Nishioka et al.   CHEMISTRY-A EUROPEAN JOURNAL

Photoregulation of DNA transcription by using photoresponsive T7 promoters and clarification of its mechanism

(2010) Xingguo Liang et al.   FEBS Journal

Accumulation of Fluorophores into DNA Duplexes To Mimic the Properties of Quantum Dots

(2010) Hiromu Kashida et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Recent Progress in Chemically Modified siRNAs

(2010) M. Gaglione et al.   MINI-REVIEWS IN MEDICINAL CHEMISTRY

Imaging of RNA delivery to cells by thiazole orange as a fluorescent RNA base substitution

(2010) Sina Berndl et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Construction of photoresponsive RNA for photoswitching RNA hybridization

(2010) Hiroshi Ito et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Syntheses and fluorescence of RNA conjugates having pyrene-modified adenosine and nitrobenzene-modified uridine base pairs

(2010) Minoru Fukuda et al.   TETRAHEDRON LETTERS

Making RISC

(2010) Tomoko Kawamata et al.   TRENDS IN BIOCHEMICAL SCIENCES

In-Stem Molecular Beacon Containing a Pseudo Base Pair of Threoninol Nucleotides for the Removal of Background Emission

(2009) Hiromu Kashida et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Fluorescent Color Readout of DNA Hybridization with Thiazole Orange as an Artificial DNA Base

(2009) Sina Berndl et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

Analysis of Coherent Heteroclustering of Different Dyes by Use of Threoninol Nucleotides for Comparison with the Molecular Exciton Theory

(2009) Taiga Fujii et al.   CHEMISTRY-A EUROPEAN JOURNAL

RNA-Binding Potential of Protoberberine Alkaloids: Spectroscopic and Calorimetric Studies on the Binding of Berberine, Palmatine, and Coralyne to Protonated RNA Structures

(2009) Md. Maidul Islam et al.   DNA AND CELL BIOLOGY

Hydrophobic Dimerization and Thermal Dissociation of Perylenediimide-Linked DNA Hairpins

(2009) Mahesh Hariharan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Light-up properties of complexes between thiazole orange-small molecule conjugates and aptamers

(2009) Renjun Pei et al.   NUCLEIC ACIDS RESEARCH

Low-Noise Stemless PNA Beacons for Sensitive DNA and RNA Detection

(2008) Elke Socher et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Perylene Bisimide Dimers as Fluorescent “Glue” for DNA and for Base-Mismatch Detection

(2008) Daniela Baumstark et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Studies of the Interaction of the Viral Suppressor of RNA Silencing Protein p19 with Small RNAs Using Fluorescence Polarization†

(2008) Jenny Cheng et al.   BIOCHEMISTRY

Microarray-based label-free detection of RNA using bispyrene-modified 2′-O-methyl oligoribonucleotide as capture and detection probe

(2008) Takashi Sakamoto et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Pyrene-Zipper Array Assembled via RNA Duplex Formation

(2008) Mitsunobu Nakamura et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Localization of Double-stranded Small Interfering RNA to Cytoplasmic Processing Bodies Is Ago2 Dependent and Results in Up-Regulation of GW182 and Argonaute-2

(2008) Aarti Jagannath et al.   MOLECULAR BIOLOGY OF THE CELL

Effect of asymmetric terminal structures of short RNA duplexes on the RNA interference activity and strand selection

(2008) Masayuki Sano et al.   NUCLEIC ACIDS RESEARCH

Threoninol as a scaffold of dyes (threoninol-nucleotide) and their stable interstrand clustering in duplexes

(2008) Hiromu Kashida et al.   ORGANIC & BIOMOLECULAR CHEMISTRY