4.6 Article

Electron Attachment to a Hydrated DNA Duplex: The Dinucleoside Phosphate Deoxyguanylyl-3 ',5 '-Deoxycytidine

Journal

CHEMISTRY-A EUROPEAN JOURNAL
Volume 16, Issue 44, Pages 13155-13162

Publisher

WILEY-V C H VERLAG GMBH
DOI: 10.1002/chem.201001306

Keywords

computational; chemistry; DNA; electron affinity; electron transfer; helical structures; proton transfer

Funding

  1. U S National Science Foundation, China [CHE 0749868]
  2. National Science & Technology Major Project Key New Drug Creation and Manufacturing Program China [2009ZX09301 001]

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The minimal essential section of DNA helices, the dinucleoside phosphate deoxyguanylyl 3`,5 -deoxycytidine dimer octahydrate, [dGpdC](2), has been constructed, fully optimized, and analyzed by using quantum chemical methods at the B3LYP/6-31 + G(d,p) level of theory Study of the electrons attached to [dGpdC](2) reveals that DNA double strands are capable of capturing low-energy electrons and forming electronically stable radical anions The relatively large vertical electron affinity (VEA) predicted for [dGpdC](2) (0 38 eV) indicates that the cytosine bases are good electron cap tors in DNA double strands The structure, charge distribution, and molecular orbital analysis for the fully optimized radical anion [dGpdC](2)(-) suggest that the extra electron tends to be redistributed to one of the cytosine base moieties, in an electronically stable structure (with adiabatic electron affinity (AEA) 1 14 eV and vertical detachment energy (VDE) 2 20 eV) The structural features of the optimized radical anion [dGpdC](2)(-) also suggest the probability of interstrand proton transfer The interstrand proton transfer leads to a distonic radical anion [d(G-H)pdC d(C+H)pdG](-), which contains one deprotonated guanine anion and one protonated cytosine radical This distonic radical anion is predicted to be more stable than [dGpdC](2)(-) Therefore, experimental evidence for electron attachment to the DNA double helices should be related to [d(G-H)pdC d-(C+H)pdG](-) complexes, for which the VDE might be as high as 2 7 eV (in dry conditions) to 3 3 eV (in fully hydrated conditions) Effects of the polarizable medium have been found to be important for increasing the electron capture ability of the dGpdC dimer The ultimate AEA value for cytosine in DNA duplexes is predicted to be 2 03 eV in aqueous solution

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