Pyrene-functionalized oligonucleotides and locked nucleic acids (LNAs): Tools for fundamental research, diagnostics, and nanotechnology

Rational Design of Functional DNA with a Non-Ribose Acyclic Scaffold

(2012) Hiromu Kashida et al.   CURRENT ORGANIC CHEMISTRY

C5-Functionalized DNA, LNA, and α-L-LNA: Positional Control of Polarity-Sensitive Fluorophores Leads to Improved SNP-Typing

(2011) Michael E. Østergaard et al.   CHEMISTRY-A EUROPEAN JOURNAL

Novel insights into the use of Glowing LNA as nucleic acid detection probes—Influence of labeling density and nucleobases

(2010) Michael E. Østergaard et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Singly and doubly labeled base-discriminating fluorescent oligonucleotide probes containing oxo-pyrene chromophore

(2010) Subhendu Sekhar Bag et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Pyrene-functionalized triazole-linked 2′-deoxyuridines—probes for discrimination of single nucleotide polymorphisms (SNPs)

(2010) Michael E. Østergaard et al.   CHEMICAL COMMUNICATIONS

Novel interstrand communication systems within DNA duplexes based on 1-, 2- and 4-(phenylethynyl)pyrenes attached to 2′-amino-LNA: high-affinity hybridization and fluorescence sensing

(2010) Irina V. Astakhova et al.   CHEMICAL COMMUNICATIONS

Binary Probes for Nucleic Acid Analysis

(2010) Dmitry M. Kolpashchikov   CHEMICAL REVIEWS

A Probe Containing Two Base-discriminating Fluorescent (BDF) Nucleosides for SNP Typing

(2010) Yasuko Yoshida et al.   CHEMISTRY LETTERS

Glowing Locked Nucleic Acids: Brightly Fluorescent Probes for Detection of Nucleic Acids in Cells

(2010) Michael E. Østergaard et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Oligopyrenotides: Abiotic, Polyanionic Oligomers with Nucleic Acid-like Structural Properties

(2010) Robert Häner et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Synthesis and structural characterization of piperazino-modified DNA that favours hybridization towards DNA over RNA

(2010) Joan Skov et al.   NUCLEIC ACIDS RESEARCH

Optimal design of parallel triplex forming oligonucleotides containing Twisted Intercalating Nucleic Acids—TINA

(2010) Uffe V. Schneider et al.   NUCLEIC ACIDS RESEARCH

Invader LNA: Efficient targeting of short double stranded DNA

(2010) Sujay P. Sau et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Duplex Stabilization and Energy Transfer in Zipper Porphyrin-DNA

(2009) ThaoNguyen Nguyen et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Pyrene-labeled deoxyguanosine as a fluorescence sensor to discriminate single and double stranded DNA structures: Design of ends free molecular beacons

(2009) Katsuhiko Matsumoto et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

C5-Functionalized LNA: Unparalleled Hybridization Properties and Enzymatic Stability

(2009) Michael E. Østergaard et al.   CHEMBIOCHEM

Detection of RNA Hybridization by Pyrene-Labeled Probes

(2009) Guojie Wang et al.   CHEMBIOCHEM

DNA as a supramolecular framework for the helical arrangements of chromophores: towards photoactive DNA-based nanomaterials

(2009) Reji Varghese et al.   CHEMICAL COMMUNICATIONS

Nucleic acid-guided assembly of aromatic chromophores

(2009) Vladimir L. Malinovskii et al.   CHEMICAL SOCIETY REVIEWS

“Double Click” Reaction on 7-Deazaguanine DNA: Synthesis and Excimer Fluorescence of Nucleosides and Oligonucleotides with Branched Side Chains Decorated with Proximal Pyrenes

(2009) Frank Seela et al.   JOURNAL OF ORGANIC CHEMISTRY

Ultraviolet resonance Raman spectroscopy of locked single-stranded oligo(dA) reveals conformational implications of the locked ribose in LNA

(2009) Stanislav O. Konorov et al.   JOURNAL OF RAMAN SPECTROSCOPY

Polyfluorophores on a DNA Backbone: A Multicolor Set of Labels Excited at One Wavelength

(2009) Yin Nah Teo et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Intrinsically Fluorescent Base-Discriminating Nucleoside Analogs

(2009) D. Dodd et al.   MINI-REVIEWS IN ORGANIC CHEMISTRY

Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances

(2009) T. LaFramboise   NUCLEIC ACIDS RESEARCH

Probing specific RNA bulge conformations by modified fluorescent nucleosides

(2009) Hyun Seok Jeong et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Red–white–blue emission switching molecular beacons: ratiometric multicolour DNA hybridization probes

(2009) Reji Varghese et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Molecular Engineering of DNA: Molecular Beacons

(2008) Kemin Wang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Targeting DNA with triplex-forming oligonucleotides to modify gene sequence

(2008) Philippe Simon et al.   BIOCHIMIE

A Simple Cytosine to G-Clamp Nucleobase Substitution Enables Chiral γ-PNAs to Invade Mixed-Sequence Double-Helical B-form DNA

(2008) Venugopal Chenna et al.   CHEMBIOCHEM

Novel strategies for the site-specific covalent labelling of nucleic acids

(2008) Samuel H. Weisbrod et al.   CHEMICAL COMMUNICATIONS

Quencher-free molecular beacons: a new strategy in fluorescence based nucleic acid analysis

(2008) Natarajan Venkatesan et al.   CHEMICAL SOCIETY REVIEWS

Highly Fluorescent Conjugated Pyrenes in Nucleic Acid Probes: (Phenylethynyl)pyrenecarbonyl-Functionalized Locked Nucleic Acids

(2008) Irina V. Astakhova et al.   CHEMISTRY-A EUROPEAN JOURNAL

Nucleic Acid Structural Engineering Using Pyrene-Functionalized 2′-Amino-α-L-LNA Monomers and Abasic Sites

(2008) T. Santhosh Kumar et al.   JOURNAL OF ORGANIC CHEMISTRY

Modulation of Pyrene Fluorescence in DNA Probes Depends upon the Nature of the Conformationally Restricted Nucleotide

(2008) Dmytro Honcharenko et al.   JOURNAL OF ORGANIC CHEMISTRY

Functionalized 2′-Amino-α-L-LNA: Directed Positioning of Intercalators for DNA Targeting

(2008) T. Santhosh Kumar et al.   JOURNAL OF ORGANIC CHEMISTRY

Pyrene-Zipper Array Assembled via RNA Duplex Formation

(2008) Mitsunobu Nakamura et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Purine twisted-intercalating nucleic acids: a new class of anti-gene molecules resistant to potassium-induced aggregation

(2008) Manikandan Paramasivam et al.   NUCLEIC ACIDS RESEARCH

The triple helix: 50 years later, the outcome

(2008) M. Duca et al.   NUCLEIC ACIDS RESEARCH

Assembling Materials with DNA as the Guide

(2008) F. A. Aldaye et al.   SCIENCE

Ends free and self-quenched molecular beacon with pyrene labeled pyrrolocytidine in the middle of the stem

(2008) Yoshio Saito et al.   TETRAHEDRON

Synthesis of 5-(2-Pyrenyl)-2′-deoxyuridine as a DNA Modification for Electron-Transfer Studies: The Critical Role of the Position of the Chromophore Attachment

(2007) Claudia Wanninger-Weiß et al.   EUROPEAN JOURNAL OF ORGANIC CHEMISTRY

Pyrene Excimer Signaling Molecular Beacons for Probing Nucleic Acids

(2007) Patrick Conlon et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY