Introduction to Focus Issue: Quantitative Approaches to Genetic Networks

Sensitive dependence on initial conditions in gene networks

(2013) A. Machina et al.   CHAOS

Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors

(2013) Mengyang Sun et al.   CHAOS

Experiments on autonomous Boolean networks

(2013) David P. Rosin et al.   CHAOS

Stabilizing gene regulatory networks through feedforward loops

(2013) C. Kadelka et al.   CHAOS

Theoretical and experimental analysis of the forced LacI-AraC oscillator with a minimal gene regulatory model

(2013) Guillermo Rodrigo et al.   CHAOS

Dynamics simulations for engineering macromolecular interactions

(2013) Avi Robinson-Mosher et al.   CHAOS

Phenotypic deconstruction of gene circuitry

(2013) Jason G. Lomnitz et al.   CHAOS

Hierarchy of models: From qualitative to quantitative analysis of circadian rhythms in cyanobacteria

(2013) M. Chaves et al.   CHAOS

Identifiability and inference of pathway motifs by epistasis analysis

(2013) Hilary Phenix et al.   CHAOS

Dynamical modeling and analysis of large cellular regulatory networks

(2013) D. Bérenguier et al.   CHAOS

Context-dependent transcriptional interpretation of mitogen activated protein kinase signaling in the Drosophila embryo

(2013) Yoosik Kim et al.   CHAOS

An experimental approach to identify dynamical models of transcriptional regulation in living cells

(2013) G. Fiore et al.   CHAOS

Towards a whole-cell modeling approach for synthetic biology

(2013) Oliver Purcell et al.   CHAOS

An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks

(2013) Jorge G. T. Zañudo et al.   CHAOS

Synthetic Biology: An Emerging Engineering Discipline

(2012) Allen A. Cheng et al.   Annual Review of Biomedical Engineering

A Synthetic Biology Framework for Programming Eukaryotic Transcription Functions

(2012) Ahmad S. Khalil et al.   CELL

Explicit construction of chaotic attractors in Glass networks

(2012) Roderick Edwards et al.   CHAOS SOLITONS & FRACTALS

Synthetic memory circuits for tracking human cell fate

(2012) D. R. Burrill et al.   GENES & DEVELOPMENT

Genetic programs constructed from layered logic gates in single cells

(2012) Tae Seok Moon et al.   NATURE

Architecture of the human regulatory network derived from ENCODE data

(2012) Mark B. Gerstein et al.   NATURE

Foundations for the design and implementation of synthetic genetic circuits

(2012) Adrian L. Slusarczyk et al.   NATURE REVIEWS GENETICS

Boolean modeling in systems biology: an overview of methodology and applications

(2012) Rui-Sheng Wang et al.   PHYSICAL BIOLOGY

Entrainment of a Population of Synthetic Genetic Oscillators

(2011) O. Mondragon-Palomino et al.   SCIENCE

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

(2010) Timothy Ravasi et al.   CELL

Synthetic biology: applications come of age

(2010) Ahmad S. Khalil et al.   NATURE REVIEWS GENETICS

Dynamics of actively regulated gene networks

(2010) Liliana Ironi et al.   PHYSICA D-NONLINEAR PHENOMENA

A Synthetic Genetic Edge Detection Program

(2009) Jeffrey J. Tabor et al.   CELL

A tunable synthetic mammalian oscillator

(2009) Marcel Tigges et al.   NATURE

Diversity-based, model-guided construction of synthetic gene networks with predicted functions

(2009) Tom Ellis et al.   NATURE BIOTECHNOLOGY

Next-generation synthetic gene networks

(2009) Timothy K Lu et al.   NATURE BIOTECHNOLOGY

Critical Boolean networks with scale-free in-degree distribution

(2009) Barbara Drossel et al.   PHYSICAL REVIEW E

Boolean chaos

(2009) Rui Zhang et al.   PHYSICAL REVIEW E

Synthetic Gene Networks That Count

(2009) A. E. Friedland et al.   SCIENCE

Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework

(2008) Élisabeth Remy et al.   ADVANCES IN APPLIED MATHEMATICS

Evolution of complex dynamics

(2008) Roy Wilds et al.   CHAOS

Segmenting the fly embryo: logical analysis of the role of the Segment Polarity cross-regulatory module

(2008) Lucas Sanchez et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

A fast, robust and tunable synthetic gene oscillator

(2008) Jesse Stricker et al.   NATURE

The Frequency Dependence of Osmo-Adaptation in Saccharomyces cerevisiae

(2008) J. T. Mettetal et al.   SCIENCE