Multiscale Particle-Based Modeling of Flowing Platelets in Blood Plasma Using Dissipative Particle Dynamics and Coarse Grained Molecular Dynamics

Simulation of Platelets Suspension Flowing Through a Stenosis Model Using a Dissipative Particle Dynamics Approach

(2013) Joao S. Soares et al.   ANNALS OF BIOMEDICAL ENGINEERING

Evaluation of Shear-Induced Platelet Activation Models Under Constant and Dynamic Shear Stress Loading Conditions Relevant to Devices

(2013) Jawaad Sheriff et al.   ANNALS OF BIOMEDICAL ENGINEERING

Computational Biorheology of Human Blood Flow in Health and Disease

(2013) Dmitry A. Fedosov et al.   ANNALS OF BIOMEDICAL ENGINEERING

The Vulnerable Atherosclerotic Plaque: Scope of the Literature

(2013) Alawi A. Alsheikh-Ali   ANNALS OF INTERNAL MEDICINE

Parameterizing the Morse potential for coarse-grained modeling of blood plasma

(2013) Na Zhang et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Analysis of Linpack and power efficiencies of the world’s TOP500 supercomputers

(2013) Yuefan Deng et al.   PARALLEL COMPUTING

Modelling of thrombus growth and growth stop in flow by the method of dissipative particle dynamics

(2013) A. Tosenberger et al.   RUSSIAN JOURNAL OF NUMERICAL ANALYSIS AND MATHEMATICAL MODELLING

A Numerical Investigation of Blood Damage in the Hinge Area of Aortic Bileaflet Mechanical Heart Valves During the Leakage Phase

(2012) B. Min Yun et al.   ANNALS OF BIOMEDICAL ENGINEERING

Microcalcifications Increase Coronary Vulnerable Plaque Rupture Potential: A Patient-Based Micro-CT Fluid–Structure Interaction Study

(2012) S. H. Rambhia et al.   ANNALS OF BIOMEDICAL ENGINEERING

Biomolecular Simulation: A Computational Microscope for Molecular Biology

(2012) Ron O. Dror et al.   Annual Review of Biophysics

On developing coarse-grained models for biomolecular simulation: a review

(2012) Sereina Riniker et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Viscous flow simulation in a stenosis model using discrete particle dynamics: a comparison between DPD and CFD

(2011) Rui Feng et al.   Biomechanics and Modeling in Mechanobiology

Time-dependent and outflow boundary conditions for Dissipative Particle Dynamics

(2011) Huan Lei et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Numerical Evaluation of Single Fiber Motion for Short-Fiber-Reinforced Composite Materials Processing

(2011) Dongdong Zhang et al.   JOURNAL OF MANUFACTURING SCIENCE AND ENGINEERING-TRANSACTIONS OF THE ASME

Systematic coarse-graining of the dynamics of entangled polymer melts: the road from chemistry to rheology

(2011) J T Padding et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Modelling platelet-blood flow interaction using the subcellular element Langevin method

(2011) C. R. Sweet et al.   Journal of the Royal Society Interface

Predicting human blood viscosity in silico

(2011) D. A. Fedosov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiscale Modeling of Red Blood Cell Mechanics and Blood Flow in Malaria

(2011) Dmitry A. Fedosov et al.   PLoS Computational Biology

Particle-Based Methods for Multiscale Modeling of Blood Flow in the Circulation and in Devices: Challenges and Future Directions

(2010) Takami Yamaguchi et al.   ANNALS OF BIOMEDICAL ENGINEERING

High-Shear Stress Sensitizes Platelets to Subsequent Low-Shear Conditions

(2010) Jawaad Sheriff et al.   ANNALS OF BIOMEDICAL ENGINEERING

Design Optimization of a Mechanical Heart Valve for Reducing Valve Thrombogenicity—A Case Study with ATS Valve

(2010) Yared Alemu et al.   ASAIO JOURNAL

A Multiscale Red Blood Cell Model with Accurate Mechanics, Rheology, and Dynamics

(2010) Dmitry A. Fedosov et al.   BIOPHYSICAL JOURNAL

Device Thrombogenicity Emulator (DTE) − Design optimization methodology for cardiovascular devices: A study in two bileaflet MHV designs

(2010) Michalis Xenos et al.   JOURNAL OF BIOMECHANICS

Large-scale simulations of fluctuating biological membranes

(2010) Andrea Pasqua et al.   JOURNAL OF CHEMICAL PHYSICS

Blood Flow and Cell-Free Layer in Microvessels

(2010) DMITRY A. FEDOSOV et al.   MICROCIRCULATION

General formulation of pressure and stress tensor for arbitrary many-body interaction potentials under periodic boundary conditions

(2009) Aidan P. Thompson et al.   JOURNAL OF CHEMICAL PHYSICS

Microscopic and macroscopic stress with gravitational and rotational forces

(2009) Wm. G. Hoover et al.   PHYSICAL REVIEW E

Micro-scale Dynamic Simulation of Erythrocyte–Platelet Interaction in Blood Flow

(2008) T. AlMomani et al.   ANNALS OF BIOMEDICAL ENGINEERING

Platelet Adhesive Dynamics. Part I: Characterization of Platelet Hydrodynamic Collisions and Wall Effects

(2008) Nipa A. Mody et al.   BIOPHYSICAL JOURNAL

Platelet Adhesive Dynamics. Part II: High Shear-Induced Transient Aggregation via GPIbα-vWF-GPIbα Bridging

(2008) Nipa A. Mody et al.   BIOPHYSICAL JOURNAL

Continuum interpretation of virial stress in molecular simulations

(2008) Arun K. Subramaniyan et al.   INTERNATIONAL JOURNAL OF SOLIDS AND STRUCTURES

Influence of microcalcifications on vulnerable plaque mechanics using FSI modeling

(2008) Danny Bluestein et al.   JOURNAL OF BIOMECHANICS

Triple-decker: Interfacing atomistic–mesoscopic–continuum flow regimes

(2008) Dmitry A. Fedosov et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Modelling thrombosis using dissipative particle dynamics method

(2008) N Filipovic et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Accurate Coarse-Grained Modeling of Red Blood Cells

(2008) Igor V. Pivkin et al.   PHYSICAL REVIEW LETTERS

Velocity limit in DPD simulations of wall-bounded flows

(2007) Dmitry A. Fedosov et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Interactions of blood cell constituents: Experimental investigation and computational modeling by discrete particle dynamics algorithm

(2007) N. Filipovic et al.   MICROVASCULAR RESEARCH

Using 3D fluid–structure interaction model to analyse the biomechanical properties of erythrocyte

(2007) C.Y. Chee et al.   PHYSICS LETTERS A