Nitrate sensing by the maize root apex transition zone: a merged transcriptomic and proteomic survey

The Electrical Network of Maize Root Apex is Gravity Dependent

(2015) Elisa Masi et al.   Scientific Reports

Co-ordination and divergence of cell-specific transcription and translation of genes in arabidopsis root cells

(2014) Dhivyaa Rajasundaram et al.   ANNALS OF BOTANY

Hormonal control of cell division and elongation along differentiation trajectories in roots

(2014) Hirotomo Takatsuka et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Primary Nitrate Response: a multifaceted signalling pathway

(2014) Anna Medici et al.   JOURNAL OF EXPERIMENTAL BOTANY

Strigolactones are involved in phosphate- and nitrate-deficiency-induced root development and auxin transport in rice

(2014) Huwei Sun et al.   JOURNAL OF EXPERIMENTAL BOTANY

Nitrate induction triggers different transcriptional changes in a high and a low nitrogen use efficiency maize inbred line

(2014) Anita Zamboni et al.   Journal of Integrative Plant Biology

Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis

(2014) Yanxia Zhang et al.   Nature Chemical Biology

Nitric oxide function in plant biology: a redox cue in deconvolution

(2014) Manda Yu et al.   NEW PHYTOLOGIST

PLAZA 3.0: an access point for plant comparative genomics

(2014) Sebastian Proost et al.   NUCLEIC ACIDS RESEARCH

TAA1-Regulated Local Auxin Biosynthesis in the Root-Apex Transition Zone Mediates the Aluminum-Induced Inhibition of Root Growth inArabidopsis

(2014) Zhong-Bao Yang et al.   PLANT CELL

Transcription factors involved in controlling the expression of nitrate reductase genes in higher plants

(2014) Shuichi Yanagisawa   PLANT SCIENCE

Combined small RNA and degradome sequencing reveals novel miRNAs and their targets in response to low nitrate availability in maize

(2013) Yongping Zhao et al.   ANNALS OF BOTANY

Novel Aspects of Dietary Nitrate and Human Health

(2013) Eddie Weitzberg et al.   Annual Review of Nutrition

Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots

(2013) Elena A Vidal et al.   BMC GENOMICS

Promzea: a pipeline for discovery of co-regulatory motifs in maize and other plant species and its application to the anthocyanin and phlobaphene biosynthetic pathways and the Maize Development Atlas

(2013) Christophe Liseron-Monfils et al.   BMC PLANT BIOLOGY

Spatial Coordination between Stem Cell Activity and Cell Differentiation in the Root Meristem

(2013) Laila Moubayidin et al.   DEVELOPMENTAL CELL

NO homeostasis is a key regulator of early nitrate perception and root elongation in maize*

(2013) Alessandro Manoli et al.   JOURNAL OF EXPERIMENTAL BOTANY

PlantGSEA: a gene set enrichment analysis toolkit for plant community

(2013) Xin Yi et al.   NUCLEIC ACIDS RESEARCH

Identification and Dynamics of Arabidopsis Adaptor Protein-2 Complex and Its Involvement in Floral Organ Development

(2013) S. Yamaoka et al.   PLANT CELL

Function of type-2 Arabidopsis hemoglobin in the auxin-mediated formation of embryogenic cells during morphogenesis

(2013) Mohamed Elhiti et al.   PLANT JOURNAL

Biochemical and quantitative proteomics investigations in Arabidopsisggt1mutant leaves reveal a role for the gamma-glutamyl cycle in plant's adaptation to environment

(2013) Serena Tolin et al.   PROTEOMICS

Strigolactone Can Promote or Inhibit Shoot Branching by Triggering Rapid Depletion of the Auxin Efflux Protein PIN1 from the Plasma Membrane

(2013) Naoki Shinohara et al.   PLOS BIOLOGY

Cytokinin Signaling Networks

(2012) Ildoo Hwang et al.   Annual Review of Plant Biology

The impact of transposable elements on eukaryotic genomes: From genome size increase to genetic adaptation to stressful environments

(2012) Benoît Chénais et al.   GENE

Evaluation of candidate reference genes for qPCR in maize

(2012) Alessandro Manoli et al.   JOURNAL OF PLANT PHYSIOLOGY

A Comprehensive Differential Proteomic Study of Nitrate Deprivation in Arabidopsis Reveals Complex Regulatory Networks of Plant Nitrogen Responses

(2012) Xu Wang et al.   JOURNAL OF PROTEOME RESEARCH

The role of auxin and cytokinin signalling in specifying the root architecture of Arabidopsis thaliana

(2012) Daniele Muraro et al.   JOURNAL OF THEORETICAL BIOLOGY

Complementary Proteome and Transcriptome Profiling in Phosphate-deficient Arabidopsis Roots Reveals Multiple Levels of Gene Regulation

(2012) Ping Lan et al.   MOLECULAR & CELLULAR PROTEOMICS

A petunia ABC protein controls strigolactone-dependent symbiotic signalling and branching

(2012) Tobias Kretzschmar et al.   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Local Root Apex Hypoxia Induces NO-Mediated Hypoxic Acclimation of the Entire Root

(2012) S. Mugnai et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis JAGGED LATERAL ORGANS Acts with ASYMMETRIC LEAVES2 to Coordinate KNOX and PIN Expression in Shoot and Root Meristems

(2012) M. I. Rast et al.   PLANT CELL

Systems Biology for Enhanced Plant Nitrogen Nutrition

(2012) R. A. Gutierrez   SCIENCE

Nitrate sensing and signaling in plants

(2012) Eléonore Bouguyon et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Uptake, allocation and signaling of nitrate

(2012) Ya-Yun Wang et al.   TRENDS IN PLANT SCIENCE

PRaTo: A web-tool to select optimal primer pairs for qPCR

(2011) Alberto Nonis et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

B2G-FAR, a species-centered GO annotation repository

(2011) Stefan Götz et al.   BIOINFORMATICS

rNA: a fast and accurate short reads numerical aligner

(2011) Francesco Vezzi et al.   BIOINFORMATICS

Transcriptome analysis reveals coordinated spatiotemporal regulation of hemoglobin and nitrate reductase in response to nitrate in maize roots

(2011) S. Trevisan et al.   NEW PHYTOLOGIST

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

MDP25, A Novel Calcium Regulatory Protein, Mediates Hypocotyl Cell Elongation by Destabilizing Cortical Microtubules in Arabidopsis

(2011) J. Li et al.   PLANT CELL

Expression and tissue-specific localization of nitrate-responsive miRNAs in roots of maize seedlings

(2011) SARA TREVISAN et al.   PLANT CELL AND ENVIRONMENT

Gene Expression Biomarkers Provide Sensitive Indicators of in Planta Nitrogen Status in Maize

(2011) X. S. Yang et al.   PLANT PHYSIOLOGY

Arabidopsis Roots and Shoots Show Distinct Temporal Adaptation Patterns toward Nitrogen Starvation

(2011) A. Krapp et al.   PLANT PHYSIOLOGY

Genome-Wide Identification of MicroRNAs in Response to Low Nitrate Availability in Maize Leaves and Roots

(2011) Zhenhua Xu et al.   PLoS One

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate

(2011) Gabriel Krouk et al.   GENOME BIOLOGY

Transcriptional Regulation of ROS Controls Transition from Proliferation to Differentiation in the Root

(2010) Hironaka Tsukagoshi et al.   CELL

Strigolactones enhance competition between shoot branches by dampening auxin transport

(2010) S. Crawford et al.   DEVELOPMENT

Identification and differential expression dynamics of peach small GTPases encoding genes during fruit development and ripening

(2010) R. Falchi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Understanding plant response to nitrogen limitation for the improvement of crop nitrogen use efficiency

(2010) S. Kant et al.   JOURNAL OF EXPERIMENTAL BOTANY

Nitric oxide reduces the stress effects of aluminum on the process of germination and early root growth of rice

(2010) Danielle Peres da Rocha Oliveiros Marciano et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana

(2010) E. A. Vidal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root apex transition zone: a signalling–response nexus in the root

(2010) František Baluška et al.   TRENDS IN PLANT SCIENCE

Nitrogen in Agriculture: Balancing the Cost of an Essential Resource

(2009) G. Philip Robertson et al.   Annual Review of Environment and Resources

Evaluation of protein pattern changes in roots and leaves of Zea mays plants in response to nitrate availability by two-dimensional gel electrophoresis analysis

(2009) Bhakti Prinsi et al.   BMC PLANT BIOLOGY

CHL1 Functions as a Nitrate Sensor in Plants

(2009) Cheng-Hsun Ho et al.   CELL

Nitric oxide modulates dynamic actin cytoskeleton and vesicle trafficking in a cell type-specific manner in root apices

(2009) A. Kasprowicz et al.   JOURNAL OF EXPERIMENTAL BOTANY

Members of the LBD Family of Transcription Factors Repress Anthocyanin Synthesis and Affect Additional Nitrogen Responses in Arabidopsis

(2009) G. Rubin et al.   PLANT CELL

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

A systems view of nitrogen nutrient and metabolite responses in Arabidopsis

(2008) Elena A Vidal et al.   CURRENT OPINION IN PLANT BIOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Nitric oxide-responsive genes and promoters in Arabidopsis thaliana: a bioinformatics approach

(2008) M. Cristina Palmieri et al.   JOURNAL OF EXPERIMENTAL BOTANY

Inhibition of shoot branching by new terpenoid plant hormones

(2008) Mikihisa Umehara et al.   NATURE

Strigolactone inhibition of shoot branching

(2008) Victoria Gomez-Roldan et al.   NATURE

PPDB, the Plant Proteomics Database at Cornell

(2008) Qi Sun et al.   NUCLEIC ACIDS RESEARCH

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

AthaMap, integrating transcriptional and post-transcriptional data

(2008) L. Bulow et al.   NUCLEIC ACIDS RESEARCH

Microarray analysis reveals early responsive genes possibly involved in localized nitrate stimulation of lateral root development in maize (Zea mays L.)

(2008) Jinxin Liu et al.   PLANT SCIENCE

Cell-specific nitrogen responses mediate developmental plasticity

(2008) M. L. Gifford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA