Genome-wide identification and predictive modeling of polyadenylation sites in eukaryotes

Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation

(2013) D. Hafez et al.   BIOINFORMATICS

Accurate identification of polyadenylation sites from 3′ end deep sequencing using a naïve Bayes classifier

(2013) Sarah Sheppard et al.   BIOINFORMATICS

Poly(A) motif prediction using spectral latent features from human DNA sequences

(2013) Bo Xie et al.   BIOINFORMATICS

Orphan nuclear receptor TR3 acts in autophagic cell death via mitochondrial signaling pathway

(2013) Wei-jia Wang et al.   Nature Chemical Biology

Role of alternative polyadenylation in epigenetic silencing and antisilencing

(2013) L. Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alternative cleavage and polyadenylation: the long and short of it

(2013) Bin Tian et al.   TRENDS IN BIOCHEMICAL SCIENCES

Extensive alternative polyadenylation during zebrafish development

(2012) I. Ulitsky et al.   GENOME RESEARCH

A quantitative atlas of polyadenylation in five mammals

(2012) Adnan Derti et al.   GENOME RESEARCH

In silico prediction of mRNA poly(A) sites in Chlamydomonas reinhardtii

(2012) Xiaohui Wu et al.   MOLECULAR GENETICS AND GENOMICS

Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation

(2012) Alexander Sherstnev et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Picking ChIP-seq peak detectors for analyzing chromatin modification experiments

(2012) Mariann Micsinai et al.   NUCLEIC ACIDS RESEARCH

Alternative polyadenylation: New insights from global analyses

(2012) Y. Shi   RNA

Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila

(2012) Peter Smibert et al.   Cell Reports

Global Analysis of RNA Secondary Structure in Two Metazoans

(2012) Fan Li et al.   Cell Reports

Single Nucleotide Polymorphisms Can Create Alternative Polyadenylation Signals and Affect Gene Expression through Loss of MicroRNA-Regulation

(2012) Laurent F. Thomas et al.   PLoS Computational Biology

Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences

(2011) Manal Kalkatawi et al.   BIOINFORMATICS

PolyA-iEP: A data mining method for the effective prediction of polyadenylation sites

(2011) George Tzanis et al.   EXPERT SYSTEMS WITH APPLICATIONS

Differential genome-wide profiling of tandem 3' UTRs among human breast cancer and normal cells by high-throughput sequencing

(2011) Y. Fu et al.   GENOME RESEARCH

Characterization and prediction of mRNA polyadenylation sites in human genes

(2011) Tzu-Hao Chang et al.   MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING

Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation

(2011) X. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq

(2011) P. J. Shepard et al.   RNA

Signals for pre-mRNA cleavage and polyadenylation

(2011) Bin Tian et al.   Wiley Interdisciplinary Reviews-RNA

POLYAR, a new computer program for prediction of poly(A) sites in human sequences

(2010) Malik Akhtar et al.   BMC GENOMICS

Comprehensive Polyadenylation Site Maps in Yeast and Human Reveal Pervasive Alternative Polyadenylation

(2010) Fatih Ozsolak et al.   CELL

A classification-based prediction model of messenger RNA polyadenylation sites

(2010) Guoli Ji et al.   JOURNAL OF THEORETICAL BIOLOGY

Genome-wide measurement of RNA secondary structure in yeast

(2010) Michael Kertesz et al.   NATURE

A paired-end sequencing strategy to map the complex landscape of transcription initiation

(2010) Ting Ni et al.   NATURE METHODS

The Landscape of C. elegans 3'UTRs

(2010) M. Mangone et al.   SCIENCE

Alternative polyadenylation and gene expression regulation in plants

(2010) Denghui Xing et al.   Wiley Interdisciplinary Reviews-RNA

Direct RNA sequencing

(2009) Fatih Ozsolak et al.   NATURE

Unique Features of Nuclear mRNA Poly(A) Signals and Alternative Polyadenylation in Chlamydomonas reinhardtii

(2008) Y. Shen et al.   GENETICS

Genome level analysis of rice mRNA 3′-end processing signals and alternative polyadenylation

(2008) Yingjia Shen et al.   NUCLEIC ACIDS RESEARCH

Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites

(2008) R. Sandberg et al.   SCIENCE