The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability

SEQanswers: an open access community for collaboratively decoding genomes

(2012) Jing-Woei Li et al.   BIOINFORMATICS

Tools for mapping high-throughput sequencing data

(2012) Nuno A. Fonseca et al.   BIOINFORMATICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Next-generation sequencing data interpretation: enhancing reproducibility and accessibility

(2012) Anton Nekrutenko et al.   NATURE REVIEWS GENETICS

A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-Seq

(2012) Robert Lindner et al.   PLoS One

Predicting cancer drivers: are we there yet?

(2012) Vidhya G Krishnan et al.   Genome Medicine

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers

(2011) M. V. Schneider et al.   BRIEFINGS IN BIOINFORMATICS

GeneProf: analysis of high-throughput sequencing experiments

(2011) Florian Halbritter et al.   NATURE METHODS

The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis

(2011) J.-W. Li et al.   NUCLEIC ACIDS RESEARCH

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

(2011) Wenyu Zhang et al.   PLoS One

Ten Simple Rules for Getting Help from Online Scientific Communities

(2011) Giovanni M. Dall'Olio et al.   PLoS Computational Biology

BioStar: An Online Question & Answer Resource for the Bioinformatics Community

(2011) Laurence D. Parnell et al.   PLoS Computational Biology

Bioinformatics training: a review of challenges, actions and support requirements

(2010) M. V. Schneider et al.   BRIEFINGS IN BIOINFORMATICS

Broader incorporation of bioinformatics in education: opportunities and challenges

(2010) M. P. Cummings et al.   BRIEFINGS IN BIOINFORMATICS

A survey of sequence alignment algorithms for next-generation sequencing

(2010) H. Li et al.   BRIEFINGS IN BIOINFORMATICS

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research

(2010) A. Bräutigam et al.   PLANT BIOLOGY

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Seeking Health Information Online: Does Wikipedia Matter?

(2009) M. R. Laurent et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH

Computing Has Changed Biology--Biology Education Must Catch Up

(2009) P. Pevzner et al.   SCIENCE

Applications of next-generation sequencing technologies in functional genomics

(2008) Olena Morozova et al.   GENOMICS