Tools for the functional interpretation of metabolomic experiments

Metab2MeSH: annotating compounds with medical subject headings

(2012) Maureen A. Sartor et al.   BIOINFORMATICS

Mayday - integrative analytics for expression data

(2012) Florian Battke et al.   BMC BIOINFORMATICS

The dynamic range of the human metabolome revealed by challenges

(2012) Susanne Krug et al.   FASEB JOURNAL

Metabolomics: the apogee of the omics trilogy

(2012) Gary J. Patti et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

So what have data standards ever done for us? The view from metabolomics

(2012) Julian L Griffin et al.   Genome Medicine

MGV: a generic graph viewer for comparative omics data

(2011) Stephan Symons et al.   BIOINFORMATICS

MPEA—metabolite pathway enrichment analysis

(2011) Matti Kankainen et al.   BIOINFORMATICS

MBRole: enrichment analysis of metabolomic data

(2011) M. Chagoyen et al.   BIOINFORMATICS

Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA

(2011) Atanas Kamburov et al.   BIOINFORMATICS

Gene set enrichment analysis: performance evaluation and usage guidelines

(2011) J.-H. Hung et al.   BRIEFINGS IN BIOINFORMATICS

Mass Spectrometry Strategies in Metabolomics

(2011) Zhentian Lei et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Profiling metabolites and peptides in single cells

(2011) Stanislav S Rubakhin et al.   NATURE METHODS

YMDB: the Yeast Metabolome Database

(2011) T. Jewison et al.   NUCLEIC ACIDS RESEARCH

Pathos: A web facility that uses metabolic maps to display experimental changes in metabolites identified by mass spectrometry

(2011) David P. Leader et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Advances in metabolite identification

(2011) David S Wishart   Bioanalysis

Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks

(2010) Jing Gao et al.   BIOINFORMATICS

The Chemical Translation Service--a web-based tool to improve standardization of metabolomic reports

(2010) G. Wohlgemuth et al.   BIOINFORMATICS

MetPA: a web-based metabolomics tool for pathway analysis and visualization

(2010) J. Xia et al.   BIOINFORMATICS

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data

(2010) F. Garcia-Alcalde et al.   BIOINFORMATICS

NMR-spectroscopic analysis of mixtures: from structure to function

(2010) Ry R Forseth et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data

(2010) J. Xia et al.   NUCLEIC ACIDS RESEARCH

Interpreting Metabolomic Profiles using Unbiased Pathway Models

(2010) Rahul C. Deo et al.   PLoS Computational Biology

Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example

(2009) Heiko Neuweger et al.   BMC Systems Biology

What can metabolomics learn from genomics and proteomics?

(2009) Masanori Arita   CURRENT OPINION IN BIOTECHNOLOGY

Database Resources in Metabolomics: An Overview

(2009) Eden P. Go   Journal of Neuroimmune Pharmacology

SMPDB: The Small Molecule Pathway Database

(2009) Alex Frolkis et al.   NUCLEIC ACIDS RESEARCH

MetaboAnalyst: a web server for metabolomic data analysis and interpretation

(2009) J. Xia et al.   NUCLEIC ACIDS RESEARCH

MeltDB: a software platform for the analysis and integration of metabolomics experiment data

(2008) Heiko Neuweger et al.   BIOINFORMATICS

Presenting and exploring biological pathways with PathVisio

(2008) Martijn P van Iersel et al.   BMC BIOINFORMATICS

Metabolic Phenotyping in Health and Disease

(2008) Elaine Holmes et al.   CELL

KEGG Atlas mapping for global analysis of metabolic pathways

(2008) S. Okuda et al.   NUCLEIC ACIDS RESEARCH

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

iPath: interactive exploration of biochemical pathways and networks

(2008) Ivica Letunic et al.   TRENDS IN BIOCHEMICAL SCIENCES

WikiPathways: Pathway Editing for the People

(2008) Alexander R Pico et al.   PLOS BIOLOGY