A reversed framework for the identification of microRNA-target pairs in plants
Published 2012 View Full Article
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Title
A reversed framework for the identification of microRNA-target pairs in plants
Authors
Keywords
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Journal
BRIEFINGS IN BIOINFORMATICS
Volume 14, Issue 3, Pages 293-301
Publisher
Oxford University Press (OUP)
Online
2012-07-19
DOI
10.1093/bib/bbs040
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Note: Only part of the references are listed.- Alternative mRNA processing increases the complexity of microRNA-based gene regulation in Arabidopsis
- (2012) Xiaozeng Yang et al. PLANT JOURNAL
- Toward microRNA-mediated gene regulatory networks in plants
- (2011) Y. Meng et al. BRIEFINGS IN BIOINFORMATICS
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- TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
- (2011) T. Vergoulis et al. NUCLEIC ACIDS RESEARCH
- SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants
- (2011) Yun Zheng et al. NUCLEIC ACIDS RESEARCH
- The Regulatory Activities of Plant MicroRNAs: A More Dynamic Perspective
- (2011) Y. Meng et al. PLANT PHYSIOLOGY
- Stars and Symbiosis: MicroRNA- and MicroRNA*-Mediated Transcript Cleavage Involved in Arbuscular Mycorrhizal Symbiosis
- (2011) E. A. Devers et al. PLANT PHYSIOLOGY
- Construction of MicroRNA- and MicroRNA*-mediated regulatory networks in plants
- (2011) Yijun Meng et al. RNA Biology
- MicroRNAs and their isomiRs function cooperatively to target common biological pathways
- (2011) Nicole Cloonan et al. GENOME BIOLOGY
- TAPIR, a web server for the prediction of plant microRNA targets, including target mimics
- (2010) Eric Bonnet et al. BIOINFORMATICS
- miR-155 and its star-form partner miR-155* cooperatively regulate type I interferon production by human plasmacytoid dendritic cells
- (2010) H. Zhou et al. BLOOD
- Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
- (2010) M. J.L. de Hoon et al. GENOME RESEARCH
- High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism
- (2010) Y. Meng et al. JOURNAL OF EXPERIMENTAL BOTANY
- DNA Methylation Mediated by a MicroRNA Pathway
- (2010) Liang Wu et al. MOLECULAR CELL
- PmiRKB: a plant microRNA knowledge base
- (2010) Y. Meng et al. NUCLEIC ACIDS RESEARCH
- starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
- (2010) Jian-Hua Yang et al. NUCLEIC ACIDS RESEARCH
- Transcriptome-wide identification of microRNA targets in rice
- (2010) Yong-Fang Li et al. PLANT JOURNAL
- Widespread regulatory activity of vertebrate microRNA* species
- (2010) J.-S. Yang et al. RNA
- Small RNAs and Their Roles in Plant Development
- (2009) Xuemei Chen Annual Review of Cell and Developmental Biology
- Origin, Biogenesis, and Activity of Plant MicroRNAs
- (2009) Olivier Voinnet CELL
- Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome
- (2009) Marcelo A German et al. Nature Protocols
- Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana
- (2009) Leonardo Alves-Junior et al. NUCLEIC ACIDS RESEARCH
- Current tools for the identification of miRNA genes and their targets
- (2009) N. D. Mendes et al. NUCLEIC ACIDS RESEARCH
- PMRD: plant microRNA database
- (2009) Zhenhai Zhang et al. NUCLEIC ACIDS RESEARCH
- Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
- (2009) H. Alexander Ebhardt et al. NUCLEIC ACIDS RESEARCH
- Rice MicroRNA Effector Complexes and Targets
- (2009) L. Wu et al. PLANT CELL
- Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome
- (2009) C. Addo-Quaye et al. RNA
- Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway
- (2009) M. Ghildiyal et al. RNA
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets
- (2008) C. Addo-Quaye et al. BIOINFORMATICS
- A toolkit for analysing large-scale plant small RNA datasets
- (2008) S. Moxon et al. BIOINFORMATICS
- SOAP: short oligonucleotide alignment program
- (2008) R. Li et al. BIOINFORMATICS
- Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide
- (2008) Shijun Mi et al. CELL
- Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome
- (2008) Charles Addo-Quaye et al. CURRENT BIOLOGY
- A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development
- (2008) Brian D. Gregory et al. DEVELOPMENTAL CELL
- Sequencing sliced ends reveals microRNA targets
- (2008) Ian R Henderson et al. NATURE BIOTECHNOLOGY
- Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends
- (2008) Marcelo A German et al. NATURE BIOTECHNOLOGY
- The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution
- (2008) Katsutomo Okamura et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- NCBI GEO: archive for high-throughput functional genomic data
- (2008) T. Barrett et al. NUCLEIC ACIDS RESEARCH
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