Finding sequence motifs in prokaryotic genomes--a brief practical guide for a microbiologist

Swelfe: a detector of internal repeats in sequences and structures

(2008) Anne-Laure Abraham et al.   BIOINFORMATICS

AIMIE: a web-based environment for detection and interpretation of significant sequence motifs in prokaryotic genomes

(2008) J. Mrazek et al.   BIOINFORMATICS

Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites

(2008) Nak-Kyeong Kim et al.   BMC BIOINFORMATICS

Long Simple Sequence Repeats in Host-Adapted Pathogens Localize Near Genes Encoding Antigens, Housekeeping Genes, and Pseudogenes

(2008) Xiangxue Guo et al.   JOURNAL OF MOLECULAR EVOLUTION

PSI-BLAST pseudocounts and the minimum description length principle

(2008) Stephen F. Altschul et al.   NUCLEIC ACIDS RESEARCH

CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea

(2007) Rotem Sorek et al.   NATURE REVIEWS MICROBIOLOGY