Biological knowledge management: the emerging role of the Semantic Web technologies

BioMart – biological queries made easy

(2009) Damian Smedley et al.   BMC GENOMICS

Moby and Moby 2: Creatures of the Deep (Web)

(2009) B. P. Vandervalk et al.   BRIEFINGS IN BIOINFORMATICS

GenoQuery: a new querying module for functional annotation in a genomic warehouse

(2008) F. Lemoine et al.   BIOINFORMATICS

BioCaster: detecting public health rumors with a Web-based text mining system

(2008) N. Collier et al.   BIOINFORMATICS

Fuzzy association rules for biological data analysis: A case study on yeast

(2008) Francisco J Lopez et al.   BMC BIOINFORMATICS

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?

(2008) R. Winnenburg et al.   BRIEFINGS IN BIOINFORMATICS

Seeking a New Biology through Text Mining

(2008) Andrey Rzhetsky et al.   CELL

Beyond data integration

(2008) Ted Slater et al.   DRUG DISCOVERY TODAY

Ontology-centric integration and navigation of the dengue literature

(2008) Menaka Rajapakse et al.   JOURNAL OF BIOMEDICAL INFORMATICS

yOWL: An ontology-driven knowledge base for yeast biologists

(2008) Natalia Villanueva-Rosales et al.   JOURNAL OF BIOMEDICAL INFORMATICS

An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence

(2008) Satya S. Sahoo et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Combining Semantic Web technologies with Multi-Agent Systems for integrated access to biological resources

(2008) Francisco García-Sánchez et al.   JOURNAL OF BIOMEDICAL INFORMATICS

State of the nation in data integration for bioinformatics

(2008) Carole Goble et al.   JOURNAL OF BIOMEDICAL INFORMATICS

HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0

(2008) Kei-Hoi Cheung et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Bio2RDF: Towards a mashup to build bioinformatics knowledge systems

(2008) François Belleau et al.   JOURNAL OF BIOMEDICAL INFORMATICS

SOMWeb: A Semantic Web-Based System for Supporting Collaboration of Distributed Medical Communities of Practice

(2008) Göran Falkman et al.   JOURNAL OF MEDICAL INTERNET RESEARCH

Specifications of insilicoML 1.0: A Multilevel Biophysical Model Description Language

(2008) Yoshiyuki Asai et al.   Journal of Physiological Sciences

The future of biocuration

(2008) Doug Howe et al.   NATURE

Prepare for the deluge

(2008)   NATURE BIOTECHNOLOGY

Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

(2008) Eric W Deutsch et al.   NATURE BIOTECHNOLOGY

The minimum information about a genome sequence (MIGS) specification

(2008) Dawn Field et al.   NATURE BIOTECHNOLOGY

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

(2008) Chris F Taylor et al.   NATURE BIOTECHNOLOGY

Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

(2008) Lincoln D. Stein   NATURE REVIEWS GENETICS

Ensembl 2009

(2008) T. J. P. Hubbard et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009

(2008) M. Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

A Semantic Web Management Model for Integrative Biomedical Informatics

(2008) Helena F. Deus et al.   PLoS One

Translational Systems Biology of Inflammation

(2008) Yoram Vodovotz et al.   PLoS Computational Biology

Calling on a million minds for community annotation in WikiProteins

(2008) Barend Mons et al.   GENOME BIOLOGY

Anni 2.0: a multipurpose text-mining tool for the life sciences

(2008) Rob Jelier et al.   GENOME BIOLOGY