Article
Oncology
Susanna Thomas, Masrura Kabir, Belinda E. Butcher, Shaun Chou, Hema Mahajan, Gelareh Farshid, Rosemary Balleine, Nirmala Pathmanathan
Summary: The study aimed to assess the interobserver concordance of two methods for measuring Ki67 in breast cancer, showing that hot spot cell counting had excellent agreement among observers, while visual estimation performed best for high proliferation areas. Both methods demonstrated excellent prognostic agreement.
BREAST CANCER RESEARCH AND TREATMENT
(2021)
Article
Oncology
Chi-Chang Yu, Yun-Chung Cheung, Shir-Hwa Ueng, Yung-Chang Lin, Wen-Ling Kuo, Shih-Che Shen, Yung-Feng Lo, Shin-Cheh Chen
Summary: This study aimed to investigate the factors associated with axillary lymph node (ALN) status in breast cancer patients initially diagnosed with clinically node-negative (cN0) tumors who underwent neoadjuvant chemotherapy (NAC). The results showed that achieving a pathologic complete response in the breast was associated with negative ALN status, while the presence of lymphovascular invasion was associated with positive ALN status.
Article
Surgery
M. E. M. van der Noordaa, F. H. van Duijnhoven, F. N. E. Cuijpers, E. van Werkhoven, T. G. Wiersma, P. H. M. Elkhuizen, G. Winter-Warnars, V Dezentje, G. S. Sonke, E. J. Groen, M. Stokkel, M. T. E. D. Vrancken Peeters
Summary: In patients with clinically node-negative breast cancer, the rate of achieving ypN0 after neoadjuvant chemotherapy is low. The study identifies characteristics known before surgery that are associated with achieving ypN0, which can help select patients for omitting sentinel lymph node biopsy.
BRITISH JOURNAL OF SURGERY
(2021)
Article
Oncology
Isaac Cebrecos, Eduard Mension, Inmaculada Alonso, Helena Castillo, Esther Sanfeliu, Sergi Vidal-Sicart, Sergi Ganau, Maria Vidal, Francesco Schettini
Summary: In early stage breast cancer patients without lymph node metastasis, the presence of positive sentinel lymph nodes after primary systemic treatment directs axillary lymph node dissection. This study aimed to identify factors associated with non-sentinel lymph node involvement and develop a predictive score. The results showed that non-sentinel lymph node involvement was infrequent (22.2%) and associated with progesterone receptor levels and macrometastatic sentinel lymph nodes. The developed predictive score accurately predicted the absence of non-sentinel lymph node involvement, suggesting that unnecessary axillary lymph node dissection could be safely avoided in most patients.
ANNALS OF SURGICAL ONCOLOGY
(2023)
Article
Oncology
Walter Carbajal-Ochoa, Daniela C. Bravo-Solarte, Ana M. Bernal, Jesus D. Anampa
Summary: Current guidelines recommendations regarding chemotherapy in small, node-negative triple-negative breast cancer differ due to lack of high-quality data. Our study suggests that adjuvant chemotherapy is beneficial for patients with node-negative, T1c TNBC, but does not improve breast cancer specific survival in patients with node-negative, T1b TNBC.
BREAST CANCER RESEARCH AND TREATMENT
(2023)
Article
Oncology
Jing Si, Rong Guo, Huan Pan, Xiang Lu, Zhiqin Guo, Chao Han, Li Xue, Dan Xing, Wanxin Wu, Caiping Chen
Summary: The aim of this study was to determine whether breast cancer patients with mastectomy and false-negative frozen section in sentinel lymph node biopsy (SLNB) could forgo axillary lymph node dissection (ALND). The study found that SLNB and axillary radiation therapy could effectively replace ALND in selected patients who met specific criteria.
FRONTIERS IN ONCOLOGY
(2022)
Article
Medicine, General & Internal
Shoshana M. Rosenberg, Anne O'Neill, Karen Sepucha, Kathy D. Miller, Chau T. Dang, Donald W. Northfelt, George W. Sledge, Bryan P. Schneider, Ann H. Partridge
Summary: This study aimed to describe and evaluate factors associated with diminished quality of life (QOL) following completion of breast cancer treatment. The study found that a substantial proportion of patients experienced pain, discomfort, anxiety, and depression even 18 months after treatment completion, highlighting the need for timely support and intervention. The study also identified mastectomy with radiation and certain racial factors as associated with lower QOL.
Article
Oncology
Aleksander Slusarczyk, Piotr Zapala, Tomasz Piecha, Pawel Rajwa, Marco Moschini, Piotr Radziszewski
Summary: The benefit of lymph node dissection (LND) in lymph node-negative UTUC remains controversial. This study aimed to assess the association between LND and survival in LN-negative UTUC. The findings suggest that LND, especially when at least four lymph nodes were removed, is associated with improved cancer-specific survival and overall survival in UTUC patients.
Article
Oncology
Inge van den Berg, Marcel Smid, Robert R. J. Coebergh van den Braak, Carolien H. M. van Deurzen, Vanja de Weerd, John A. Foekens, Jan N. M. IJzermans, John W. M. Martens, Saskia M. Wilting
Summary: Circular RNAs (circRNAs) play an important role in tumor progression of colon cancer (CC) and have potential clinical value as biomarkers for diagnosis, prognosis, and treatment. A large cohort study identified a diverse catalog of circRNAs in stage I/II colon tumors and found that high circRNA diversity was associated with favorable disease-free survival (DFS). Specific circRNAs were also associated with MSI and CMS, highlighting their potential utility for prognostic stratification in patients with early-stage colon cancer.
Article
Oncology
Wenting Peng, Caijin Lin, Shanshan Jing, Guanhua Su, Xi Jin, Genhong Di, Zhiming Shao
Summary: This study established clinical prognostic model, seven-gene signature, and combined model for predicting distant metastasis risk in lymph node-negative TNBC patients. The seven-gene signature showed significant differentiation of distant metastasis risk in both training and validation sets. The composite clinical and gene signature demonstrated improved prognostic accuracy compared to the clinical signature.
FRONTIERS IN ONCOLOGY
(2021)
Article
Oncology
Annarita Fanizzi, Domenico Pomarico, Angelo Paradiso, Samantha Bove, Sergio Diotaiuti, Vittorio Didonna, Francesco Giotta, Daniele La Forgia, Agnese Latorre, Maria Irene Pastena, Pasquale Tamborra, Alfredo Zito, Vito Lorusso, Raffaella Massafra
Summary: Sentinel lymph node biopsy is crucial for patient diagnosis, but surgery can sometimes be performed without a clear diagnosis. To assist current diagnostic procedures, machine learning algorithms can offer support. The CancerMath tool proves to be effective in predicting sentinel lymph node positivity for clinically negative patients.
Article
Radiology, Nuclear Medicine & Medical Imaging
Hannah L. Chung, Huong T. Le-Petross, Jessica W. T. Leung
Summary: Metastatic lymph node involvement in breast cancer plays a crucial role in determining disease stage and prognosis. Neoadjuvant systemic treatment is increasingly used as initial therapy. Imaging and image-guided interventions are essential for lymph node assessment and treatment decision-making.
Article
Oncology
Corrado Tinterri, Andrea Sagona, Erika Barbieri, Simone Di Maria Grimaldi, Giulia Caraceni, Giacomo Ambrogi, Flavia Jacobs, Ersilia Biondi, Lorenzo Scardina, Damiano Gentile
Summary: The controversy over the de-escalation of axillary surgery in breast cancer patients undergoing neo-adjuvant chemotherapy still exists. However, recent studies have shown that a minimally invasive surgical approach of the axilla is safe in patients who become clinically node-negative after neo-adjuvant chemotherapy. This retrospective study aims to assess the reliability of this approach by comparing the characteristics and oncological outcomes of different types of axillary surgery.
Article
Surgery
Xuefei Wang, Guochao Zhang, Zhichao Zuo, Qingli Zhu, Shafei Wu, Yidong Zhou, Feng Mao, Yan Lin, Songjie Shen, Xiaohui Zhang, Xue Qin, Cunli Yan, Xiaoying Ma, Yue Shi, Qiang Sun
Summary: This retrospective study found an association between SLN positive rate and non-SLN metastasis in breast cancer, with SLN-PR > 0.333 being a potential risk factor for non-SLN metastasis. The results provide valuable reference for guiding adjuvant treatment in breast cancer patients.
JOURNAL OF SURGICAL RESEARCH
(2022)
Article
Cell Biology
Carlotta Tacconi, Catharina D. Commerford, Lothar C. Dieterich, Simon Schwager, Yuliang He, Kristian Ikenberg, Ekaterina Friebel, Burkhard Becher, Sonia Tugues, Michael Detmar
Summary: This study shows that CD169(+) lymph node macrophages play a protective role in breast cancer metastasis, and their expansion is linked to B cell expansion in tumor-draining lymph nodes. Depletion of these macrophages increases metastatic burden, highlighting the caution needed in targeting tumor-associated macrophages to avoid unintended consequences in tumor-draining lymph nodes.
Review
Cell Biology
Francesca Marchisella, Eleanor T. Coffey, Patrik Hollos
Article
Biochemistry & Molecular Biology
H. Mohammad, F. Marchisella, S. Ortega-Martinez, P. Hollos, K. Eerola, E. Komulainen, N. Kulesskaya, E. Freemantle, V. Fagerholm, E. Savontous, H. Rauvala, B. D. Peterson, H. van Praag, E. T. Coffey
MOLECULAR PSYCHIATRY
(2018)
Article
Neurosciences
Artur Padzik, Prasannakumar Deshpande, Patrik Hollos, Mariella Franker, Emmy H. Rannikko, Dawen Cai, Piotr Prus, Mats Magard, Nina Westerlund, Kristen J. Verhey, Peter James, Casper C. Hoogenraad, Eleanor T. Coffey
FRONTIERS IN CELLULAR NEUROSCIENCE
(2016)
Correction
Biochemistry & Molecular Biology
H. Mohammad, F. Marchisella, S. Ortega-Martinez, P. Hollos, K. Eerola, E. Komulainen, N. Kulesskaya, E. Freemantle, V. Fagerholm, E. Savontaus, H. Rauvala, B. D. Peterson, H. van Praag, E. T. Coffey
MOLECULAR PSYCHIATRY
(2018)
Article
Biochemical Research Methods
Satish Jadhav, Vijay Gulumkar, Prasannakumar Deshpande, Eleanor T. Coffey, Harri Lonnberg, Pasi Virta
BIOCONJUGATE CHEMISTRY
(2018)
Review
Neurosciences
Artemis Varidaki, Ye Hong, Eleanor T. Coffey
FRONTIERS IN CELLULAR NEUROSCIENCE
(2018)
Article
Behavioral Sciences
J. David, S. Gormley, A. L. McIntosh, V. Kebede, G. Thuery, A. Varidaki, E. T. Coffey, A. Harkin
BEHAVIOURAL BRAIN RESEARCH
(2019)
Article
Cell Biology
Emilia Komulainen, Artemis Varidaki, Natalia Kulesskaya, Hasan Mohammad, Christel Sourander, Heikki Rauvala, Eleanor T. Coffey
Article
Cell Biology
Niina M. Santio, Veera Vainio, Tuuli Hoikkala, Kwan Long Mung, Mirka Lang, Riitta Vahakoski, Justyna Zdrojewska, Eleanor T. Coffey, Elena Kremneva, Eeva-Marja Rainio, Paivi J. Koskinen
CELL COMMUNICATION AND SIGNALING
(2020)
Article
Biochemistry & Molecular Biology
Prasannakumar Deshpande, Dani Flinkman, Ye Hong, Elena Goltseva, Valentina Siino, Lihua Sun, Sirkku Peltonen, Laura L. Elo, Valtteri Kaasinen, Peter James, Eleanor T. Coffey
Article
Biochemical Research Methods
Ye Hong, Dani Flinkman, Tomi Suomi, Sami Pietila, Peter James, Eleanor Coffey, Laura L. Elo
Summary: This article introduces an integrated pipeline that utilizes multiple R packages to extract high-level biological understanding from large-scale phosphoproteomic data. The pipeline includes data clean-up, statistical analysis, differential expression analysis, phosphosite annotation and translation, enrichment analysis, proteome-wide kinase activity and substrate mapping, and network hub analysis.
BRIEFINGS IN BIOINFORMATICS
(2022)
Correction
Biochemical Research Methods
Ye Hong, Dani Flinkman, Tomi Suomi, Sami Pietila, Peter James, Eleanor Coffey, Laura L. Elo
BRIEFINGS IN BIOINFORMATICS
(2022)
Article
Biochemistry & Molecular Biology
Giulia Montagna, Giuseppe Pani, Dani Flinkman, Francesco Cristofaro, Barbara Pascucci, Luca Massimino, Luigi Antonio Lamparelli, Lorenzo Fassina, Peter James, Eleanor Coffey, Giuseppina Rea, Livia Visai, Angela Maria Rizzo
Summary: For the first time, this study characterizes the morphological, biochemical, and molecular changes in human bone marrow stromal cells during long-term simulated microgravity exposure. It reveals that simulated microgravity affects osteogenic differentiation and energy metabolism, and identifies dysregulated proteins that may be potential targets for future translational projects. The findings provide insights into the cell response to simulated microgravity and suggest the application of nanomaterials for mitigating the effects of microgravity.
CELLULAR AND MOLECULAR LIFE SCIENCES
(2022)
Article
Neurosciences
Dani Flinkman, Ye Hong, Jelena Gnjatovic, Prasannakumar Deshpande, Zsuzsanna Ortutay, Sirkku Peltonen, Valtteri Kaasinen, Peter James, Eleanor Coffey
Summary: Deficits in protein synthesis are associated with Parkinson's disease (PD). We conducted a study to identify the specific proteins affected and differences in synthesis between sporadic and LRRK2-G2019S PD patients. Through proteomic analysis, we found that regulators of endo-lysosomal sorting, mRNA processing, and components of the translation machinery were consistently low in both sporadic and LRRK2-G2019S PD patients. This study provides valuable insights into the dysregulation of proteostasis in PD.
NPJ PARKINSONS DISEASE
(2023)
Article
Neurosciences
Patrik Hollos, Jismi M. John, Jukka V. Lehtonen, Eleanor T. Coffey