A metabolite-centric view on flux distributions in genome-scale metabolic models

Genome-scale metabolic representation of Amycolatopsis balhimycina

(2012) Wanwipa Vongsangnak et al.   BIOTECHNOLOGY AND BIOENGINEERING

Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico

(2012) Michael J McAnulty et al.   BMC Systems Biology

Systems metabolic engineering of microorganisms for natural and non-natural chemicals

(2012) Jeong Wook Lee et al.   Nature Chemical Biology

Recent advances in reconstruction and applications of genome-scale metabolic models

(2011) Tae Yong Kim et al.   CURRENT OPINION IN BIOTECHNOLOGY

An Experimentally Validated Genome-Scale Metabolic Reconstruction of Klebsiella pneumoniae MGH 78578, iYL1228

(2011) Y.-C. Liao et al.   JOURNAL OF BACTERIOLOGY

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model

(2010) K. Yizhak et al.   BIOINFORMATICS

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

A Genome-Scale Metabolic Model Accurately Predicts Fluxes in Central Carbon Metabolism under Stress Conditions

(2010) Thomas C.R. Williams et al.   PLANT PHYSIOLOGY

Prediction of metabolic fluxes by incorporating genomic context and flux-converging pattern analyses

(2010) J. M. Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

OptForce: An Optimization Procedure for Identifying All Genetic Manipulations Leading to Targeted Overproductions

(2010) Sridhar Ranganathan et al.   PLoS Computational Biology

Thioredoxins and Glutaredoxins: Unifying Elements in Redox Biology

(2009) Yves Meyer et al.   Annual Review of Genetics

Flux-sum analysis: a metabolite-centric approach for understanding the metabolic network

(2009) Bevan Chung et al.   BMC Systems Biology

Evaluation of 13C isotopic tracers for metabolic flux analysis in mammalian cells

(2009) Christian M. Metallo et al.   JOURNAL OF BIOTECHNOLOGY

Development and experimental verification of a genome-scale metabolic model for Corynebacterium glutamicum

(2009) Yohei Shinfuku et al.   Microbial Cell Factories

Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production

(2009) Caroline Colijn et al.   PLoS Computational Biology

In silico genome-scale reconstruction and validation of theCorynebacterium glutamicummetabolic network

(2008) Kjeld Raunkjaer Kjeldsen et al.   BIOTECHNOLOGY AND BIOENGINEERING

Role of GldA in dihydroxyacetone and methylglyoxal metabolism ofEscherichia coliK12

(2008) Krishna P. Subedi et al.   FEMS MICROBIOLOGY LETTERS

Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1

(2008) M. A. Oberhardt et al.   JOURNAL OF BACTERIOLOGY

Stoichiometric modelling of cell metabolism

(2008) Francisco Llaneras et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Selection and optimization of microbial hosts for biofuels production

(2008) Curt R. Fischer et al.   METABOLIC ENGINEERING

Network-based prediction of human tissue-specific metabolism

(2008) Tomer Shlomi et al.   NATURE BIOTECHNOLOGY

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

(2008) Adam M Feist et al.   NATURE BIOTECHNOLOGY

Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network

(2008) Gal Chechik et al.   NATURE BIOTECHNOLOGY

Identification of metabolic fluxes in hepatic cells from transient13C-labeling experiments: Part II. Flux estimation

(2007) Klaus Maier et al.   BIOTECHNOLOGY AND BIOENGINEERING

Metabolic flux analysis and metabolic engineering of microorganisms

(2007) Hyun Uk Kim et al.   Molecular BioSystems