- Home
- Publications
- Publication Search
- Publication Details
Title
The systems biology simulation core algorithm
Authors
Keywords
Systems biology, Biological networks, Mathematical modeling, Simulation, Algorithms, Ordinary differential equation systems, Numerical integration, Software engineering
Journal
BMC Systems Biology
Volume 7, Issue 1, Pages 55
Publisher
Springer Nature
Online
2013-07-05
DOI
10.1186/1752-0509-7-55
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The virtual liver: a multidisciplinary, multilevel challenge for systems biology
- (2012) Hermann-Georg Holzhütter et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- JSBML: a flexible Java library for working with SBML
- (2011) Andreas Dräger et al. BIOINFORMATICS
- Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language
- (2011) Dagmar Waltemath et al. BMC Systems Biology
- Systems Biology: Evolving into the Mainstream
- (2011) Colin Macilwain CELL
- A quantitative comparison of Calvin–Benson cycle models
- (2011) Anne Arnold et al. TRENDS IN PLANT SCIENCE
- Analyzing the Functional Properties of the Creatine Kinase System with Multiscale ‘Sloppy’ Modeling
- (2011) Hannes Hettling et al. PLoS Computational Biology
- Minimum Information About a Simulation Experiment (MIASE)
- (2011) Dagmar Waltemath et al. PLoS Computational Biology
- Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation
- (2010) Wolfram Liebermeister et al. BIOINFORMATICS
- An overview of the CellML API and its implementation
- (2010) Andrew K Miller et al. BMC BIOINFORMATICS
- BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
- (2010) Chen Li et al. BMC Systems Biology
- iBioSim: a tool for the analysis and design of genetic circuits
- (2009) C. J. Myers et al. BIOINFORMATICS
- A Comprehensive Model for the Humoral Coagulation Network in Humans
- (2009) T Wajima et al. CLINICAL PHARMACOLOGY & THERAPEUTICS
- Comparing simulation results of SBML capable simulators
- (2008) F. T. Bergmann et al. BIOINFORMATICS
- The CellML Model Repository
- (2008) C. M. Lloyd et al. BIOINFORMATICS
- LibSBML: an API Library for SBML
- (2008) B. J. Bornstein et al. BIOINFORMATICS
- SBMLsqueezer: A CellDesigner plug-in to generate kinetic rate equations for biochemical networks
- (2008) Andreas Dräger et al. BMC Systems Biology
- A Pharmacodynamic Model for the Time Course of Tumor Shrinkage by Gemcitabine + Carboplatin in Non-Small Cell Lung Cancer Patients
- (2008) L.-S. Tham et al. CLINICAL CANCER RESEARCH
- Virtual Cell modelling and simulation software environment
- (2008) I.I. Moraru et al. IET Systems Biology
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started