The Cell Collective: Toward an open and collaborative approach to systems biology

PathCase-SB: integrating data sources and providing tools for systems biology research

(2012) Sarp A Coskun et al.   BMC Systems Biology

Toward a comprehensive language for biological systems

(2011) James R Faeder   BMC BIOLOGY

BoolNet—an R package for generation, reconstruction and analysis of Boolean networks

(2010) Christoph Müssel et al.   BIOINFORMATICS

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Logical modelling of regulatory networks with GINsim 2.3

(2009) A. Naldi et al.   BIOSYSTEMS

ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists

(2009) Tomáš Helikar et al.   BMC Systems Biology

Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance

(2009) Özgür Sahin et al.   BMC Systems Biology

Logical analysis of the budding yeast cell cycle

(2009) D.J. Irons   JOURNAL OF THEORETICAL BIOLOGY

Computational biology: Biological logic

(2009) Lucas Laursen   NATURE

The CellML Model Repository

(2008) C. M. Lloyd et al.   BIOINFORMATICS

Emergent decision-making in biological signal transduction networks

(2008) T. Helikar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Practical application of CellML 1.1: The integration of new mechanisms into a human ventricular myocyte model

(2008) David Nickerson et al.   PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

WikiPathways: Pathway Editing for the People

(2008) Alexander R Pico et al.   PLOS BIOLOGY