Assessment of network perturbation amplitudes by applying high-throughput data to causal biological networks

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems

(2011) L. Geistlinger et al.   BIOINFORMATICS

Construction of a computable cell proliferation network focused on non-diseased lung cells

(2011) Jurjen W Westra et al.   BMC Systems Biology

A computable cellular stress network model for non-diseased pulmonary and cardiovascular tissue

(2011) Walter K Schlage et al.   BMC Systems Biology

A CD133-related gene expression signature identifies an aggressive glioblastoma subtype with excessive mutations

(2011) X. Yan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Specific miRNA signatures are associated with metastasis and poor prognosis in clear cell renal cell carcinoma

(2011) Joana Heinzelmann et al.   WORLD JOURNAL OF UROLOGY

Causal reasoning identifies mechanisms of sensitivity for a novel AKT kinase inhibitor, GSK690693

(2010) Rakesh Kumar et al.   BMC GENOMICS

Single-cell NF-κB dynamics reveal digital activation and analogue information processing

(2010) Savaş Tay et al.   NATURE

Small molecule activators of SIRT1 replicate signaling pathways triggered by calorie restriction in vivo

(2009) Jesse J Smith et al.   BMC Systems Biology

Biomarker Discovery: Identification of a Growth Factor Gene Signature

(2009) A Loboda et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Network inference and network response identification: moving genome-scale data to the next level of biological discovery

(2009) Diogo F. T. Veiga et al.   Molecular BioSystems

Preclinical biomarkers for a cyclin-dependent kinase inhibitor translate to candidate pharmacodynamic biomarkers in phase I patients

(2009) W. Berkofsky-Fessler et al.   MOLECULAR CANCER THERAPEUTICS

A Genomic Strategy to Elucidate Modules of Oncogenic Pathway Signaling Networks

(2009) Jeffrey T. Chang et al.   MOLECULAR CELL

The Role of Hypoxia in 2-Butoxyethanol–Induced Hemangiosarcoma

(2009) Daphna Laifenfeld et al.   TOXICOLOGICAL SCIENCES

Oncogenic Pathway Combinations Predict Clinical Prognosis in Gastric Cancer

(2009) Chia Huey Ooi et al.   PLoS Genetics

A unified approach to false discovery rate estimation

(2008) Korbinian Strimmer   BMC BIOINFORMATICS