Continuous time boolean modeling for biological signaling: application of Gillespie algorithm

Comparing Signaling Networks between Normal and Transformed Hepatocytes Using Discrete Logical Models

(2011) J. Saez-Rodriguez et al.   CANCER RESEARCH

Modeling transcriptional networks in Drosophila development at multiple scales

(2011) Zeba Wunderlich et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

BoolNet—an R package for generation, reconstruction and analysis of Boolean networks

(2010) Christoph Müssel et al.   BIOINFORMATICS

Stabilizing patterning in the Drosophila segment polarity network by selecting models in silico

(2010) Gautier Stoll et al.   BIOSYSTEMS

Receptor cross-talk in angiogenesis: Mapping environmental cues to cell phenotype using a stochastic, Boolean signaling network model

(2010) Amy L. Bauer et al.   JOURNAL OF THEORETICAL BIOLOGY

Reliability of Transcriptional Cycles and the Yeast Cell-Cycle Oscillator

(2010) Volkan Sevim et al.   PLoS Computational Biology

Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance

(2009) Özgür Sahin et al.   BMC Systems Biology

Sampling-rate-dependent probabilistic Boolean networks

(2009) Golnaz Vahedi et al.   JOURNAL OF THEORETICAL BIOLOGY

From structure to dynamics: Frequency tuning in the p53–Mdm2 network

(2009) Wassim Abou-Jaoudé et al.   JOURNAL OF THEORETICAL BIOLOGY

ON/OFF and Beyond - A Boolean Model of Apoptosis

(2009) Rebekka Schlatter et al.   PLoS Computational Biology