An integrative approach to inferring biologically meaningful gene modules

IntelliGO: a new vector-based semantic similarity measure including annotation origin

(2011) Sidahmed Benabderrahmane et al.   BMC BIOINFORMATICS

An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology

(2010) Shobhit Jain et al.   BMC BIOINFORMATICS

Revealing and avoiding bias in semantic similarity scores for protein pairs

(2010) Jing Wang et al.   BMC BIOINFORMATICS

Searching for functional gene modules with interaction component models

(2010) Juuso A Parkkinen et al.   BMC Systems Biology

Identification of responsive gene modules by network-based gene clustering and extending: application to inflammation and angiogenesis

(2010) Jin Gu et al.   BMC Systems Biology

Identifying functional modules using expression profiles and confidence-scored protein interactions

(2009) Igor Ulitsky et al.   BIOINFORMATICS

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

Learning a Prior on Regulatory Potential from eQTL Data

(2009) Su-In Lee et al.   PLoS Genetics

A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge

(2008) Young-Rae Cho et al.   BMC BIOINFORMATICS