Simulating Quantitative Cellular Responses Using Asynchronous Threshold Boolean Network Ensembles

Employing a Mechanistic Model for the Mapk Pathway to Examine the Impact of Cellular all or None Behavior on Overall Tissue Response

(2010) Nicholas S. Luke et al.   Dose-Response

Single-cell NF-κB dynamics reveal digital activation and analogue information processing

(2010) Savaş Tay et al.   NATURE

Simulating Microdosimetry in a Virtual Hepatic Lobule

(2010) John Wambaugh et al.   PLoS Computational Biology

Modeling system states in liver cells: Survival, apoptosis and their modifications in response to viral infection

(2009) Nicole Philippi et al.   BMC Systems Biology

The crosstalk between EGF, IGF, and Insulin cell signaling pathways - computational and experimental analysis

(2009) Rafal Zielinski et al.   BMC Systems Biology

Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis

(2009) Sabrina L. Spencer et al.   NATURE

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

A Dynamic Analysis of IRS-PKR Signaling in Liver Cells: A Discrete Modeling Approach

(2009) Ming Wu et al.   PLoS One

The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data

(2009) Regina Samaga et al.   PLoS Computational Biology

PID: the Pathway Interaction Database

(2008) Carl F. Schaefer et al.   NUCLEIC ACIDS RESEARCH

Boolean Network Model Predicts Cell Cycle Sequence of Fission Yeast

(2008) Maria I. Davidich et al.   PLoS One

Dynamic Proteomics of Individual Cancer Cells in Response to a Drug

(2008) A. A. Cohen et al.   SCIENCE