A Boolean probabilistic model of metabolic adaptation to oxygen in relation to iron homeostasis and oxidative stress

Simulation of a Petri net-based Model of the Terpenoid Biosynthesis Pathway

(2010) Aliah Hawari et al.   BMC BIOINFORMATICS

Biophysics and systems biology

(2010) D. Noble   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Timing Robustness in the Budding and Fission Yeast Cell Cycles

(2010) Karan Mangla et al.   PLoS One

Regulation of Hepcidin and Iron-Overload Disease

(2009) Pauline L. Lee et al.   Annual Review of Pathology-Mechanisms of Disease

Biophysical Characterization of the Iron in Mitochondria from Atm1p-DepletedSaccharomyces cerevisiae

(2009) Ren Miao et al.   BIOCHEMISTRY

Modeling Cardiac Action Potential Shortening Driven by Oxidative Stress-Induced Mitochondrial Oscillations in Guinea Pig Cardiomyocytes

(2009) Lufang Zhou et al.   BIOPHYSICAL JOURNAL

Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension

(2009) Chen Li et al.   BMC Systems Biology

Stochastic simulation and analysis of biomolecular reaction networks

(2009) John M Frazier et al.   BMC Systems Biology

Lipid peroxidation: Physiological levels and dual biological effects

(2009) Etsuo Niki   FREE RADICAL BIOLOGY AND MEDICINE

Boolean network-based analysis of the apoptosis network: Irreversible apoptosis and stable surviving

(2009) Zhongxing Mai et al.   JOURNAL OF THEORETICAL BIOLOGY

A general map of iron metabolism and tissue-specific subnetworks

(2009) Valerie Hower et al.   Molecular BioSystems

How to deal with large models?

(2009) William S Hlavacek   Molecular Systems Biology

AutoClass@IJM: a powerful tool for Bayesian classification of heterogeneous data in biology

(2009) Fiona Achcar et al.   NUCLEIC ACIDS RESEARCH

Temporal self-organization of the cyclin/Cdk network driving the mammalian cell cycle

(2009) C. Gerard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ON/OFF and Beyond - A Boolean Model of Apoptosis

(2009) Rebekka Schlatter et al.   PLoS Computational Biology

How mitochondria produce reactive oxygen species

(2008) Michael P. Murphy   BIOCHEMICAL JOURNAL

EPR and Mössbauer Spectroscopy of Intact Mitochondria Isolated from Yah1p-DepletedSaccharomyces cerevisiae†

(2008) Ren Miao et al.   BIOCHEMISTRY

Promotion of Zn2+ Uptake by Al3+ in a Saccharomyces Cerevisiae Mutant that Lacks the ZRT1 Gene Encoding a High-Affinity Zn Transporter

(2008) Shun Tamura et al.   BIOLOGICAL TRACE ELEMENT RESEARCH

Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A

(2008) Paula Jouhten et al.   BMC Systems Biology

Cerebellar development and disease

(2008) Kathleen J Millen et al.   CURRENT OPINION IN NEUROBIOLOGY

Oxidative Stress and Covalent Modification of Protein with Bioactive Aldehydes

(2008) Paul A. Grimsrud et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Biological switches and clocks

(2008) J. J Tyson et al.   Journal of the Royal Society Interface

A comprehensive modular map of molecular interactions in RB/E2F pathway

(2008) Laurence Calzone et al.   Molecular Systems Biology

Mitochondrial Dysfunction in Neurodegenerative Diseases

(2008) Anthony H. V. Schapira   NEUROCHEMICAL RESEARCH

Boolean Network Model Predicts Cell Cycle Sequence of Fission Yeast

(2008) Maria I. Davidich et al.   PLoS One

Computational Systems Analysis of Dopamine Metabolism

(2008) Zhen Qi et al.   PLoS One

Floral Morphogenesis: Stochastic Explorations of a Gene Network Epigenetic Landscape

(2008) Elena R. Álvarez-Buylla et al.   PLoS One