Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhiziinfection

Genome-Wide Evolutionary Characterization and Expression Analyses of WRKY Family Genes in Brachypodium distachyon

(2014) F. Wen et al.   DNA RESEARCH

Genome-wide analysis of the WRKY gene family in cotton

(2014) Lingling Dou et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum

(2012) Shengxiong Huang et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa

(2012) Hongsheng He et al.   PLANT CELL REPORTS

Identification of a new soybean rust resistance gene in PI 567102B

(2012) Shuxian Li et al.   THEORETICAL AND APPLIED GENETICS

Molecular mapping of soybean rust resistance in soybean accession PI 561356 and SNP haplotype analysis of the Rpp1 region in diverse germplasm

(2012) Ki-Seung Kim et al.   THEORETICAL AND APPLIED GENETICS

Roles of arabidopsis WRKY18, WRKY40 and WRKY60 transcription factors in plant responses to abscisic acid and abiotic stress

(2011) Han Chen et al.   BMC PLANT BIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Biphasic Gene Expression Changes Elicited by Phakopsora pachyrhizi in Soybean Correlate with Fungal Penetration and Haustoria Formation

(2011) Katherine T. Schneider et al.   PLANT PHYSIOLOGY

SoyDB: a knowledge database of soybean transcription factors

(2010) Zheng Wang et al.   BMC PLANT BIOLOGY

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

Transgenic fertile soybean plants derived from somatic embryos transformed via the combined DNA-free particle bombardment and Agrobacterium system

(2010) Beatriz Wiebke-Strohm et al.   EUPHYTICA

Functional Analysis of the Asian Soybean Rust Resistance Pathway Mediated byRpp2

(2010) Ajay K. Pandey et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

(2010) He Zhang et al.   NUCLEIC ACIDS RESEARCH

Identification of a Pathogen-Induced Glycine max Transcription Factor GmWRKY1

(2010) Sang-Gu Kang et al.   Plant Pathology Journal

Genome-Wide Classification and Evolutionary Analysis of the bHLH Family of Transcription Factors in Arabidopsis, Poplar, Rice, Moss, and Algae

(2010) L. Carretero-Paulet et al.   PLANT PHYSIOLOGY

Expression analyses indicate the involvement of sunflower WRKY transcription factors in stress responses, and phylogenetic reconstructions reveal the existence of a novel clade in the Asteraceae

(2010) Jorge I. Giacomelli et al.   PLANT SCIENCE

Transcriptome analysis of a compatible response by Glycine max to Phakopsora pachyrhizi infection

(2010) Arianne Tremblay et al.   PLANT SCIENCE

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition

(2009) Michael Freeling   Annual Review of Plant Biology

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments

(2009) Bo Yang et al.   BMC PLANT BIOLOGY

Phakopsora pachyrhizi, the causal agent of Asian soybean rust

(2009) KATHARINA GOELLNER et al.   MOLECULAR PLANT PATHOLOGY

SoyBase, the USDA-ARS soybean genetics and genomics database

(2009) David Grant et al.   NUCLEIC ACIDS RESEARCH

The Role of WRKY Transcription Factors in Plant Immunity

(2009) S. P. Pandey et al.   PLANT PHYSIOLOGY

Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots

(2008) Elke Mangelsen et al.   BMC GENOMICS

SuperSAGE: A Modern Platform for Genome-Wide Quantitative Transcript Profiling

(2008) Hideo Matsumura et al.   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

Expression patterns in soybean resistant to Phakopsora pachyrhizi reveal the importance of peroxidases and lipoxygenases

(2008) J. J. Choi et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants

(2008) Qi-Yun Zhou et al.   PLANT BIOTECHNOLOGY JOURNAL

Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function

(2008) Ingo Ciolkowski et al.   PLANT MOLECULAR BIOLOGY

Tobacco Transcription Factors: Novel Insights into Transcriptional Regulation in the Solanaceae

(2008) P. J. Rushton et al.   PLANT PHYSIOLOGY

A Novel WRKY Transcription Factor Is Required for Induction of PR-1a Gene Expression by Salicylic Acid and Bacterial Elicitors

(2008) M. C. van Verk et al.   PLANT PHYSIOLOGY

Differential expression of genes in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) is soybean growth stage-specific

(2008) Dilip R. Panthee et al.   THEORETICAL AND APPLIED GENETICS

Molecular mapping of soybean rust (Phakopsora pachyrhizi) resistance genes: discovery of a novel locus and alleles

(2008) Alexandre Garcia et al.   THEORETICAL AND APPLIED GENETICS

Identification of Four Soybean Reference Genes for Gene Expression Normalization

(2008) M. Libault et al.   Plant Genome