A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with Sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the plastid evolution of basal eudicots
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with Sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the plastid evolution of basal eudicots
Authors
Keywords
N. nucifera, Chloroplast genome sequencing, Basal eudicots, Systematic position, Divergence time, PacBio RS II
Journal
BMC PLANT BIOLOGY
Volume 14, Issue 1, Pages -
Publisher
Springer Nature
Online
2014-11-18
DOI
10.1186/s12870-014-0289-0
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
- (2014) Brad R Ruhfel et al. BMC EVOLUTIONARY BIOLOGY
- Another Look at the Root of the Angiosperms Reveals a Familiar Tale
- (2014) Bryan T. Drew et al. SYSTEMATIC BIOLOGY
- An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome
- (2013) Marco Ferrarini et al. BMC GENOMICS
- Horizontal Transfer of DNA from the Mitochondrial to the Plastid Genome and Its Subsequent Evolution in Milkweeds (Apocynaceae)
- (2013) Shannon C.K. Straub et al. Genome Biology and Evolution
- The Complete Chloroplast Genome Sequence of Cephalotaxus oliveri (Cephalotaxaceae): Evolutionary Comparison of Cephalotaxus Chloroplast DNAs and Insights into the Loss of Inverted Repeat Copies in Gymnosperms
- (2013) Xuan Yi et al. Genome Biology and Evolution
- Sequencing Angiosperm Plastid Genomes Made Easy: A Complete Set of Universal Primers and a Case Study on the Phylogeny of Saxifragales
- (2013) Wenpan Dong et al. Genome Biology and Evolution
- Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates
- (2013) Mao-Lun Weng et al. MOLECULAR BIOLOGY AND EVOLUTION
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- Mechanisms of Functional and Physical Genome Reduction in Photosynthetic and Nonphotosynthetic Parasitic Plants of the Broomrape Family
- (2013) S. Wicke et al. PLANT CELL
- The sacred lotus genome provides insights into the evolution of flowering plants
- (2013) Yun Wang et al. PLANT JOURNAL
- The Complete Chloroplast Genome of Banana (Musa acuminata, Zingiberales): Insight into Plastid Monocotyledon Evolution
- (2013) Guillaume Martin et al. PLoS One
- Complete Plastid Genome Sequencing of Trochodendraceae Reveals a Significant Expansion of the Inverted Repeat and Suggests a Paleogene Divergence between the Two Extant Species
- (2013) Yan-xia Sun et al. PLoS One
- Comparative Chloroplast Genomes of Camellia Species
- (2013) Jun-Bo Yang et al. PLoS One
- Complete Sequencing of Five Araliaceae Chloroplast Genomes and the Phylogenetic Implications
- (2013) Rong Li et al. PLoS One
- Reducing assembly complexity of microbial genomes with single-molecule sequencing
- (2013) Sergey Koren et al. GENOME BIOLOGY
- Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform
- (2013) Erin B Fichot et al. Microbiome
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
- (2012) Michael Quail et al. BMC GENOMICS
- The Complete Chloroplast Genome of Ginkgo biloba Reveals the Mechanism of Inverted Repeat Contraction
- (2012) Ching-Ping Lin et al. Genome Biology and Evolution
- Sequencing the unsequenceable: Expanded CGG-repeat alleles of the fragile X gene
- (2012) E. W. Loomis et al. GENOME RESEARCH
- The limitations of draft assemblies for understanding prokaryotic adaptation and evolution
- (2012) N. Ricker et al. GENOMICS
- Complete cpDNA genome sequence of Smilax china and phylogenetic placement of Liliales – Influences of gene partitions and taxon sampling
- (2012) Juan Liu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations
- (2012) Trevor J. Pugh et al. NATURE
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- The mitochondrial genome sequence of the ciliate Paramecium caudatum reveals a shift in nucleotide composition and codon usage within the genus Paramecium
- (2011) Dana Barth et al. BMC GENOMICS
- Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing
- (2011) Shannon CK Straub et al. BMC GENOMICS
- Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes
- (2011) E. Delannoy et al. MOLECULAR BIOLOGY AND EVOLUTION
- Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times
- (2011) M. d. Reis et al. MOLECULAR BIOLOGY AND EVOLUTION
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Multiple northern refugia for Asian sacred lotus, an aquatic plant with characteristics of ice-age endurance
- (2010) Jiao-Kun Li et al. AUSTRALIAN JOURNAL OF BOTANY
- Why does biparental plastid inheritance revive in angiosperms?
- (2010) Quan Zhang et al. JOURNAL OF PLANT RESEARCH
- Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
- (2010) M. J. Moore et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
- (2009) BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- Complete chloroplast DNA sequence from a Korean endemic genus, Megaleranthis saniculifolia, and its evolutionary implications
- (2009) Young-Kyu Kim et al. MOLECULES AND CELLS
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- Episodic Evolution and Adaptation of Chloroplast Genomes in Ancestral Grasses
- (2009) Bojian Zhong et al. PLoS One
- GenomeVx: simple web-based creation of editable circular chromosome maps
- (2008) G. C. Conant et al. BIOINFORMATICS
- Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
- (2008) Rui-Jiang Wang et al. BMC EVOLUTIONARY BIOLOGY
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now